Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00230 ATGCCATTGGCGAATGCTCATCTCATTCATTCCCTTATCTTTCCTTCTCCATATCCATTATATCATATTACTTCTAACTCTCTTCTCTTCACTCTTCAATTTCAAACATGTTGTGCGTTAACACCGCCTTCACCTCTTTCGTACCCACAAATTCAACTTGCGTTCTTTCCTCTAAATCACGCACCCAAATTTCCTGCACCCTCCCAGGAACAACCCCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTCCGTGAAAGGTCTGAAAATGTTGATCTTGTGGTGGAAATTTCTCTGCAACCGTGGCATGTTTTCAAGCCTGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGGGTCCAGTCATATTTGATCCTATTCACACGGCTGCCCAGGTTGATGAAGTGAGGGAGTTTATTCCTGAAGATTCAGTTCCATATGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTTCTTGGTTTTGTTGGGGCACCATTCACCCTGGCATCATATGTTGTTGAAGGTGGTTCATCAAAAAACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAATCCAAGATCTTGCACTCGTTACTGCAGAAGTTTACAAAGTCAATGGCAAGATACATTCAATACCAAGCAGACAATGGAGCCCAAGCTGTTCAGATCTTTGATTCATGGGCTACAGAGCTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGCCATCCAAAACTCCCTTTGATCCTATATGCAAGTGGGTCTGGGGGCTTGCTTGAAAGACTAGCTTTGACAGGGGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGAAGGAGGCGACTGGGACCAAATATAGCTGTACAGGGGAACGTGGATCCTGGTGTTCTTTTTGGTTCAAAAGAGTTCATCACTGATCGGATAAATGATACAGTGAGAAAAGCTGGTAGAGGGAAACATATCTTGAATCTTGGTCATGGCATTAAAGTAGTAACTAAATTTCCTAAGTTGAGCTTAATGTGTGAAGATGTAAGCATGCAACAACGATTCTCTAATTCTGAGTGTAGGAAGCACCATGTGGCTCTCCCCGTCTCTTCAAACGGGGGAGCATTTGAATTGGATGATGAGATAGGAGTCTGGACATTTAGAGCATTTTCTCTGAAGCCGTTCTGTAGTTAA 1326 0.4223 MPLANAHLIHSLIFPSPYPLYHITSNSLLFTLQFQTCCALTPPSPLSYPQIQLAFFPLNHAPKFPAPSQEQPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTAAQVDEVREFIPEDSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTKSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPKLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHILNLGHGIKVVTKFPKLSLMCEDVSMQQRFSNSECRKHHVALPVSSNGGAFELDDEIGVWTFRAFSLKPFCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00230 441 CDD URO-D 69 377 IPR006361 GO:0004853|GO:0006779
Cca01g00230 441 TIGRFAM hemE: uroporphyrinogen decarboxylase 69 393 IPR006361 GO:0004853|GO:0006779
Cca01g00230 441 Hamap Uroporphyrinogen decarboxylase [hemE]. 61 397 IPR006361 GO:0004853|GO:0006779
Cca01g00230 441 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 69 382 - -
Cca01g00230 441 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 73 82 IPR000257 GO:0004853|GO:0006779
Cca01g00230 441 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 193 209 IPR000257 GO:0004853|GO:0006779
Cca01g00230 441 Gene3D - 67 394 IPR038071 -
Cca01g00230 441 SUPERFAMILY UROD/MetE-like 70 393 IPR038071 -
Cca01g00230 441 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 69 382 - -
Cca01g00230 441 Pfam Uroporphyrinogen decarboxylase (URO-D) 69 392 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00230 Cca-Chr1 2388189 2400582 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00230 K01599 - gmx:100800753 611.683