Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00217 ATGGACACGCGCCGCCGCCATGAGGAGCCACACTCACCCAAACCCGTCGTTCTCATCACGGGTTGCTCCACGGGAGGGATAGGCCACGCGCTCGCACGCGCCTTCGCCGAGAGAAAGTGCAGGGTGGTGGCCACCAGCAGATCGCGGAAGAGCATGGCGGAGCTGGAACACGACCACAGGTTTTCGTTGCAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGCAGAGTGGTCGATGATGTTGTCGACAAGTTCGGTCGCATCGACGTGCTCGTTAACAACGCGGGTGTTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTTCCATACAAAACACCTTCGACACCAATGTCTTCGGTTCCTTGAGAATGGTTCAGGCTGTTGCTCCTCATATGGCAACTAAGAAACGGGGAAAGATTGTCAACATTGGCAGTGTTGCTGCCTTGGCCTCTGGACCTTGGTCAGGCACTTATACTTCTTCCAAAGCAGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTGTCCCCGGAGCAATCGAATCAAACATTGGAGATTCTGCCATAGCCAACTACAACCGCATGCCTGAGTTGAAACTATTCAAGCCTTTTGAAGCAGCAATCCGAGATAGAGCTTACTTTTCTCAGAAGTCCAAAAAGACCCCTGCAGATGAGTTTGCCAAGCACACTGTGGCTGCTATCCTCAAGGAGAAACCACCTGCATGGTTCTCCTATGGCCATTACTCAACAGCCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTGTCTTGAAGAAAGCAATGAAAGGGTGA 858 0.5082 MDTRRRHEEPHSPKPVVLITGCSTGGIGHALARAFAERKCRVVATSRSRKSMAELEHDHRFSLQELDVQSDESVRRVVDDVVDKFGRIDVLVNNAGVQCVGPLAEVPLSSIQNTFDTNVFGSLRMVQAVAPHMATKKRGKIVNIGSVAALASGPWSGTYTSSKAALHALTDTLRLELGHFGIDVVNVVPGAIESNIGDSAIANYNRMPELKLFKPFEAAIRDRAYFSQKSKKTPADEFAKHTVAAILKEKPPAWFSYGHYSTAMAIMYHLPISVRDFVLKKAMKG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00217 285 PANTHER BNAANNG04690D PROTEIN 14 283 - -
Cca01g00217 285 Pfam short chain dehydrogenase 16 199 IPR002347 -
Cca01g00217 285 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Cca01g00217 285 CDD 17beta-HSD-like_SDR_c 16 261 - -
Cca01g00217 285 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Cca01g00217 285 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Cca01g00217 285 PRINTS Glucose/ribitol dehydrogenase family signature 133 149 IPR002347 -
Cca01g00217 285 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Cca01g00217 285 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Cca01g00217 285 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 190 - -
Cca01g00217 285 Gene3D - 15 278 - -
Cca01g00217 285 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Cca01g00217 285 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 IPR002347 -
Cca01g00217 285 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Cca01g00217 285 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 14 283 - -
Cca01g00217 285 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 273 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00217 Cca-Chr1 2250011 2252763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00217 16 196 Acyl Lipid Metabolism Gene Families AT3G55310 33.679 8.66e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00217 - - gmx:100789660 485.337