Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00215 ATGTCGCCAAAATATCAGATTCTCGACAATCGTTCCATTAATCAGTGGAAGGTTACAGAGCTGAGAGATGAGCTGAAGAGGAGGAGGTTAAGTGCCAAAGGTTTGAAGGATGATTTGATCAGGCGTTTGGATGAAGCCCTTCGTCTTGAAAGGGAGGTTGATGAGGCTTCTGACAAGGATGATGCTGCTGAGAAGGACGAGGCCAATGGATTCGATGGTCATGTAGATGGGGAAAAAGAATCGGAGGCGGTTAATGCGGATGCTGAAGTGGTTGATACAACTGTCAGGGACAATGCAAAAACACTTGAAGCTGTTGAAAAGGGGAATAGTGGTGTAGTTGAACCGGTTGAAACTGGAAGTGTGGAAAAGATTCCGGAGGTTGTGGATCATGACAGTGATAAGAATGATAAACAGGATGGTGATACTGTCCAAGTTGACATTAATAATAGTGTGTCAGCCATGGAGGAAGAAGTTGAACATAAGGGTTTTCCAGCTGGTGGAGATTCTGCAAATGTGGGAGAGGAGGCAACTGACCATACGTCTAGTGTGGAGACCACCATTACCGTCGCCAAGTGTGTACTAACAGAAGTAGTAGCCAGTGGTGAGGATTCTTATCGTGCAGAAAAGAATAATGAGGATTCAGCAGCAAAGCTGGAGAATGAGGAGTCAAAGGCGCAGCTGGATGATGAGGACACAAAGCCCCAAATGGATTGTGACACAAAGCCCTTGCATGAGGATCCTGTGCCCGACTCTTCTGTCCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAGGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGTACCTGTTTATGATGAATCTCATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCTTCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAACAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATAAAGTAGAGAGTATTGAAAAGCTTATTGTGAAGGAGGAAATTAGTACTATAGTTGTGGGAGATGGTCTATCTGCAGAAAAAATGGATACCAGCCAAGATGTTGATATTAGTCCTGTTGCCCCGGCTGAGAAAAGAAAATTTCATGAGCAAGCATCAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGAACCACAAAGCACTACTCCCAGACCTGCTACTACACCTAAAGATGAGCCAATTGCTCTGAAACGCAACTTCTCTAGGTCTGATTCCTCTGTTTCTGATGATGCACCTAAAGAACGCATTGTTCCACCATCACAAAGCTCCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCTGTGGAAGAGGCTATCGAGACTAGAAATGCTGTGTATAATTTGCAATGGCCACCAAACGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAGATGAAGTTAGAACCTCCTCCTACTCAGGCTGCCTCTGTCAGCACTGCTCCAACAGTTCCTCCTGCACCCCCCTCCTCACAGCCAGAGCCTCCACCCCGTCTGCACCGGGAGCAGCAtccagctccagctacgctcccacctccacccccaTTATCAAAAACCCCTCCAGTAGCAAGAGAGCGGCTTCCATCTCCACCACCCCTTCCTGAGAAAGTTGATCCACCTATTGTCACTCTGGATGATCTATTCCGCAAAACCACAGCAACTCCTCGGATCTACTATTTACCTTTGTCTGAAGAGCAAGTTGCCGCAAAACTTGCAGCACAGGGTAAAAGCATGAGGCAGTATGTAGGGCATTAG 2142 0.4379 MSPKYQILDNRSINQWKVTELRDELKRRRLSAKGLKDDLIRRLDEALRLEREVDEASDKDDAAEKDEANGFDGHVDGEKESEAVNADAEVVDTTVRDNAKTLEAVEKGNSGVVEPVETGSVEKIPEVVDHDSDKNDKQDGDTVQVDINNSVSAMEEEVEHKGFPAGGDSANVGEEATDHTSSVETTITVAKCVLTEVVASGEDSYRAEKNNEDSAAKLENEESKAQLDDEDTKPQMDCDTKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIVRPEMVEEPSSRNVPVYDESHSMDVGGLHEKKASVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDKVESIEKLIVKEEISTIVVGDGLSAEKMDTSQDVDISPVAPAEKRKFHEQASVGNNEPAKRQRRWNTETVKGPEPQSTTPRPATTPKDEPIALKRNFSRSDSSVSDDAPKERIVPPSQSSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPPTQAASVSTAPTVPPAPPSSQPEPPPRLHREQHPAPATLPPPPPLSKTPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSMRQYVGH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00215 713 Pfam RNSP1-SAP18 binding (RSB) motif 664 707 IPR032552 -
Cca01g00215 713 MobiDBLite consensus disorder prediction 123 141 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 50 94 - -
Cca01g00215 713 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 706 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 484 500 - -
Cca01g00215 713 CDD RRM_ACINU 514 598 IPR034257 -
Cca01g00215 713 Coils Coil 46 66 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 461 476 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 611 625 - -
Cca01g00215 713 Gene3D SAP domain 12 64 IPR036361 -
Cca01g00215 713 MobiDBLite consensus disorder prediction 303 384 - -
Cca01g00215 713 SUPERFAMILY RNA-binding domain, RBD 508 596 IPR035979 GO:0003676
Cca01g00215 713 MobiDBLite consensus disorder prediction 202 248 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 421 515 - -
Cca01g00215 713 SUPERFAMILY SAP domain 13 50 IPR036361 -
Cca01g00215 713 MobiDBLite consensus disorder prediction 361 384 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 635 667 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 252 281 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 598 669 - -
Cca01g00215 713 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Cca01g00215 713 Pfam SAP domain 13 47 IPR003034 -
Cca01g00215 713 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 706 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 339 359 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 199 281 - -
Cca01g00215 713 SMART sap_9 13 47 IPR003034 -
Cca01g00215 713 MobiDBLite consensus disorder prediction 50 86 - -
Cca01g00215 713 MobiDBLite consensus disorder prediction 122 183 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00215 K12875 - gmx:100786288 1125.15