Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00212 ATGCGGTGGCGCTTGTTCTCGCTTCTCTTTCTGTTCTTGTTGGAGCCGCTAACGCCTCGCGCAATGCCGGTTCCGCTCACGTTCTCCGCGCGCCTCGTGCACCGCTTCGCCGATGAAATCAAACCGGTTCGCTCTCCGGCCTCGCCGGACCGGAGGAGCTTCCGCTACTTCCAGATGCTTCTCACCGGCGACATTCTCAGGCGCAAGATCAACCTCGGAGCCGCACGCTACCAGCTTCTGTTTCCTTCTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTGCATTACGCGTGGATTGATATAGGAACGCCGAGTACCTCGTTTCTCGTGGCGCTGGACGCAGGGAGTGATCTTCTTTGGATTCCGTGTGATTGCGTGCAGTGTGCTCCGTTGTCGTCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCGTCTCGGTCGTTATCCAGTAAGCGTCTGTCTTGCAGTCACCGGTTGTGTGATATGGGTTCGGATTGTAAAAGTTCTCAGCAGCAGTGTCCGTACACAGTCAGTTACTTGTCAGAGAACACATCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCTTCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGTCTAATGGGTTTGGGACCTGGAGAAAGTTCGGTTCCAAGTTTGCTTGCTAAAGCTGGATTAATCCACAATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCGTCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATACTCAACCTACATTGTTGGAGTGGAGTCATGTTGTATTGGGAATACTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTTGATAGTGGGACGTCATTTACATTTCTTCCTGGCCATGCATATGGAGCAATAGCTGATGAGTTTGATGAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATACACCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCGTGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCGTTGGATTTTGTTTAGCCATACAGCCAACTGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGAAAGCAAGAAGCTAGCATGGTCACGCTCAAATTGTCAGGATCTCAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAGCAAAGAACCAACGGGCATGCAGTTGCTCCAGCGGTTGCTGGAAGAGCTCCCCGAAAACCTTCGGCTGCTTCGTCTCGGATGATTTCATCATGCCGGGTACACTGGCACCGCTATTTGTTTCTTCTATTTCAACTCGTGTCTGCTTTTTACTGA 1572 0.4809 MRWRLFSLLFLFLLEPLTPRAMPVPLTFSARLVHRFADEIKPVRSPASPDRRSFRYFQMLLTGDILRRKINLGAARYQLLFPSHGSKTMSLGNDFGWLHYAWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKRLSCSHRLCDMGSDCKSSQQQCPYTVSYLSENTSSSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLMGLGPGESSVPSLLAKAGLIHNSFSLCFNEDDSGRMFFGDQGPTVQQSTSFLPLDGLYSTYIVGVESCCIGNTCLKMTSFKAQVDSGTSFTFLPGHAYGAIADEFDEQVNGSRSSFEGSPWEYCYTPSSQELPKVPSLTLVFQQNNSFVVYDPVFVFYGNEGVVGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRESKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPRKPSAASSRMISSCRVHWHRYLFLLFQLVSAFY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00212 523 Gene3D Acid Proteases 86 281 IPR021109 -
Cca01g00212 523 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Cca01g00212 523 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Cca01g00212 523 PRINTS Pepsin (A1) aspartic protease family signature 419 434 IPR001461 GO:0004190|GO:0006508
Cca01g00212 523 ProSiteProfiles Peptidase family A1 domain profile. 99 443 IPR033121 -
Cca01g00212 523 PANTHER ASPARTYL PROTEASES 14 464 IPR001461 GO:0004190|GO:0006508
Cca01g00212 523 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 14 464 - -
Cca01g00212 523 Gene3D Acid Proteases 284 449 IPR021109 -
Cca01g00212 523 Pfam Xylanase inhibitor N-terminal 101 281 IPR032861 -
Cca01g00212 523 MobiDBLite consensus disorder prediction 452 477 - -
Cca01g00212 523 MobiDBLite consensus disorder prediction 452 493 - -
Cca01g00212 523 Pfam Xylanase inhibitor C-terminal 320 443 IPR032799 -
Cca01g00212 523 SUPERFAMILY Acid proteases 93 448 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00212 Cca-Chr1 2197421 2201635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00212 92 450 Miscellaneous Gene Families AT1G44130 27.225 8.51e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00212 - - gmx:100782209 945.266