Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00211 ATGGACTCAGACCCCGCAACCTCCGATCCCGAGACCCAGCCGTTCTCGAAGCAAATCGACGACCAGTGCCACGACATGAGTTCCCTCGAAGACCTCGCGAACCGCGGCGCGTGGCGCTCCATCATCGACAAAGTCTCACGCGCGCGAGCACTCTCTCTCCTCCACAAGCCCCACGACCACCTCACCTACCTCGCCTTCAACGCCCTCGCTTTCACCAAACTGCGTCGTTTCAACGAAGCCTCCGCAGAGCTCGATTCCCTCGAAGACCTCCAATCCTCCCACTACCGCTACGAAACCTACCCCAAAATTTACCCTAATCGGGTCGGATCCATGGTCCCCTTCTCCCTCCGGTGGCTCCACGCCCTAATTCCGATCAAACTAGGGCAACGTCAGCAAGGCATGGACCGCTTCTACACCCTCCTCGATTTCGTTCGCCAGAAAATCAAGGAAAAGGAGAACAACGACGCCCTCAATGTATCCCTCTCTCTCTGGAGGAAAAGAGAGGTTTTTGTGGTGAATTGCATAATTGGGCACCATTTGAGTCAGAAGGAGTTCGGCGTGTGTTTGAGCTTGATGAAGGAGCTTCTCTCTCGTTCCTCCGACCCTTTACTGGTTTCGCAGCTCGGGTACATGCAGTTGCAGGTGGGGGACCTTGAGGGCGCGAAAGTTTCGTTTTTGAAGGTGGAGAGTGAGGGGAAGAGTAACGGGTCGTTGAGCGAGGTTGAGTTTAGGAACCTTGTGAATAGGAACAAGGCGTTGGTGTATTTGGTTGGGAAAGATTACGTGTCTGCGGTGAGGGAGTTCGAGGAGTGCATTGAGAGGGACAGTTCGGATGTTGTGGCGGTGAACAACAAGGCTCTGTGTTTGATGTATCTGAGGGACCTTTCGGATTCTATTAAGGTGTTGGAGAGTGCGCTTGAGAGAGTTCCCACTCTGGCGCTCAATGAGACGCTTGTTGTCAATTTGTGTAGTATGTATGAGTTGGCGTATGTTAATCACTCTGATATTAAGAGGACGCTTAGTAGTTGGATTGCTCGTGTTGCTCCTGATGACTTTGATGCATCGTGTACTCGTACATGA 1080 0.525 MDSDPATSDPETQPFSKQIDDQCHDMSSLEDLANRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALAFTKLRRFNEASAELDSLEDLQSSHYRYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGMDRFYTLLDFVRQKIKEKENNDALNVSLSLWRKREVFVVNCIIGHHLSQKEFGVCLSLMKELLSRSSDPLLVSQLGYMQLQVGDLEGAKVSFLKVESEGKSNGSLSEVEFRNLVNRNKALVYLVGKDYVSAVREFEECIERDSSDVVAVNNKALCLMYLRDLSDSIKVLESALERVPTLALNETLVVNLCSMYELAYVNHSDIKRTLSSWIARVAPDDFDASCTRT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00211 359 SUPERFAMILY TPR-like 201 314 IPR011990 GO:0005515
Cca01g00211 359 SMART tpr_5 202 235 IPR019734 GO:0005515
Cca01g00211 359 SMART tpr_5 245 278 IPR019734 GO:0005515
Cca01g00211 359 SMART tpr_5 279 312 IPR019734 GO:0005515
Cca01g00211 359 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00211 359 Gene3D Tetratricopeptide repeat domain 29 338 IPR011990 GO:0005515
Cca01g00211 359 PANTHER F-BOX DOMAIN, TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN PROTEIN-RELATED 18 358 - -
Cca01g00211 359 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 18 358 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00211 K20309 - gmx:100779691 644.81