Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00202 ATGGGAGGCAATTCACCAGAAAGGAAACCTAGTTGTAGCTTTATAACAACAGTATTTCGGCGACGCAATCCATGGTCACGCAAACCAGTCTCTGAATGTTCTTCTCCCACCACCAACACTCTTGGATCCCCATCAAACAACCAAGATTCCAAACGACGATGTGGAGAATCCAATGATGTTACTTTAGTTGCAGAAGATTCGTACAACGATGTCATAATTTCTTCATCTTGTTCTGTCTCCAATCCTCAAAGGCCAACACATGTTGTAAACCAAAGGAAACCACATCATCATCCCAATGAGAGAATAATGGTTAATAAAGGGCCCTCACCTACTCAAGGCTATGTCAACCAAGGTAGAAGGGTTCCAAAAGAAGCTGTTGGCATTTCTGGTGAACTTGAAAGCATGATCAACGATTACCAAAAGTCCAAGGGAAGTAGCACCCTTGTTCGAGCTTCTTCTAGCAACGTGATGTTGTTTGGTAACTTAGGTAACCTTAGGCAAGGAGGAGTTGGTGTAGATAACAATGCTTACAGTGCAATGGATTACTATGTTTGTGATGGAGGATACACAAACCATACCATAGGACGTGAAGATTATATTAGCACCGATAAATCAAGCAAGGAACAACAAAGATCACTTTGTAGGGCTTTGTCTACTAGAATGGATCCTGAGCAATTGAAGATAATGGGAAATGAGGATTATAAGAACGGAAGATTTGCTGAGGCACTGGCTTTGTATGATGCTGCTATTGCAATAGACCCTAATAAGGCTTCTTATAGGAGCAACAAAAGTGCAGCATTAACTGCTCTAGGTAGGCATTTGGAGGCTGTTTTTGAATGCAGAGAAGCCATTCGAATTGAGTCTCATTACCATAGAGCCCATAATCGATTGGGAAATTTGTACTTAAGATTAGGAGAAGCGAACAAGGCCATGTATCATTATAAACAAGCAGGACTAGAGGCTGATCCTGATGAGATTGCTAAAGCAAAGATTCTCCAAGTACATCTAAACAAATGCACCGAGGCTCGTAGGTTAGGAGATTGGAAGACACTATTAACTGAGACTAACAAAGTTATATCATCTGGTGCAGATTCTGCTCCACAAATATATGCATTACAAGCTGAAGCCTTGCTAAAGCTACGTAGGCATCAAGATGCAGACAAAGTAATGTCAAAGTGTCCTAAATTTGATGTTGACCAGTGTACCAAGTTCTTTGGACCAATTGGAAATGCAAGTTTATTGGTGACACGTGCTCATGTTGATTTGGCTTCTGGAAGATTTGAAGATGCTCTAGAGGCAGCACAAAAAGCAACTAGGTTGGATTCTAATAGTAAAGAGGCAAACAAGGTGATGGTAAAGGTCCGAGTTGTCACAGCTGCACGTGCAAAGGGAAATGCGTTTTTCAAGATGTCAAAATTCTCTGAGGCATGCATTGCTTATGGAGAAGGCCTTGAGAATGATCCATATAACTCTGTTTTATTATGCAATAGAGGTGCATGCAAATCAAAACTATGCCAATTTGAGAAAGCTATCGATGATTGCACAGCTGCCCTTAACTTACGCCCGTCTTATGGTAAGGCCAGATTGAGAAGGGCAGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACATGACTATGAAATCTTGCTAAAAGAGACACCGGGAGATGAGAAAGTAAAGCAGGCATTGGTGGAGGCCCAATCACAACTTAAGAAACAAGCGAGGTGA 1734 0.4135 MGGNSPERKPSCSFITTVFRRRNPWSRKPVSECSSPTTNTLGSPSNNQDSKRRCGESNDVTLVAEDSYNDVIISSSCSVSNPQRPTHVVNQRKPHHHPNERIMVNKGPSPTQGYVNQGRRVPKEAVGISGELESMINDYQKSKGSSTLVRASSSNVMLFGNLGNLRQGGVGVDNNAYSAMDYYVCDGGYTNHTIGREDYISTDKSSKEQQRSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNKSAALTALGRHLEAVFECREAIRIESHYHRAHNRLGNLYLRLGEANKAMYHYKQAGLEADPDEIAKAKILQVHLNKCTEARRLGDWKTLLTETNKVISSGADSAPQIYALQAEALLKLRRHQDADKVMSKCPKFDVDQCTKFFGPIGNASLLVTRAHVDLASGRFEDALEAAQKATRLDSNSKEANKVMVKVRVVTAARAKGNAFFKMSKFSEACIAYGEGLENDPYNSVLLCNRGACKSKLCQFEKAIDDCTAALNLRPSYGKARLRRADCNAKLERWEASIHDYEILLKETPGDEKVKQALVEAQSQLKKQAR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00202 577 MobiDBLite consensus disorder prediction 79 99 - -
Cca01g00202 577 Pfam Tetratricopeptide repeat 230 281 - -
Cca01g00202 577 Pfam Tetratricopeptide repeat 417 490 - -
Cca01g00202 577 SUPERFAMILY TPR-like 223 446 IPR011990 GO:0005515
Cca01g00202 577 Gene3D Tetratricopeptide repeat domain 221 577 IPR011990 GO:0005515
Cca01g00202 577 SUPERFAMILY TPR-like 458 575 IPR011990 GO:0005515
Cca01g00202 577 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 576 IPR044534 -
Cca01g00202 577 MobiDBLite consensus disorder prediction 23 56 - -
Cca01g00202 577 SMART tpr_5 457 490 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 525 558 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 257 290 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 411 444 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 291 325 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 491 524 IPR019734 GO:0005515
Cca01g00202 577 SMART tpr_5 223 256 IPR019734 GO:0005515
Cca01g00202 577 MobiDBLite consensus disorder prediction 28 51 - -
Cca01g00202 577 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Cca01g00202 577 Pfam Tetratricopeptide repeat 292 317 IPR019734 GO:0005515
Cca01g00202 577 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Cca01g00202 577 PANTHER OS01G0616333 PROTEIN 5 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00202 Cca-Chr1 2012478 2015870 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00202 - - gmx:100811282 830.091