Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00199 ATGTCTTCCCTTCAACTATTGCATCTAACTCGGAATGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAGCTTTATTACTTACATCTGGTATCTTATTCGCTGGTGGAACAGCTGCATATATGCAATCAAGATTTAGAGCTAATAAACATGATTTATTTGACCATTGCAATGGGCACAACAATGAAAAAGACACAGAGGAGGAGGTTGTGAAGAGTGTTAATGCACCAAAAAATAAACAAAAGAAAGGGTTAAAGTCACTCCAAGTCCTTGCTGCAATTCTACTATCTAAGATGGGCAAATTAGGTGCAAGGGATCTTTTAGGTTTAGTTGCTATTGCGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTCTTAAGCTAATTTCAGAAAATATTCTTCTGTGCTTTCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCGGAGTTAAGTGAAATTGTACAGGATGATCTAACAGCAGTTACTGATGGACTTCTATACACTTGGAGGCTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCATATGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCTCCTTCATTTGGAAAACTTATGTCCAAAGAGCAACAATTGGAAGGAGAGTATCGACAGCTTCACTCGCGATTAAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGGAAAGAAGAATCTCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCACATGCATAAAGTGCTACATGATCATTGGTGGTTTGGCATGATTCAGGACTTATTACTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTAATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCCGACAGTTCAACTTTAGGGCGTGCAAAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATATCCTTATTTCAGTCCCTAGGAACACTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAATTAATGGCTGTCTCAAGGGATTTGAGCTTGGTGGATGAGAAATCTTCCCTGCAAAGAAAAGGAAGTAAAAATTGCATAAGTGAAGCTAACTACATTGAATTTTATGGTGTCAAGGTTGTGACCCCCACTGGCAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAACCAGGGTCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCTTTGATTTCTGGATATATTGTGAAGCCTGGAATTGGCTCCGATCTTAATAAGGAGATTTTCTATGTGCCGCAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTTTTACTATAGATCAGGAGGTTGAACGACTCACAGATCATGGGATGGTGGAGCTGTTAAAAAATGTTGACCTTGAATACCTGTTGGATCGTTACCCGCCTGATAAGGAGGTAAACTGGGGTGATGAACTTTCATTGGGTGAGCAGCAGAGATTGGGCATGGCAAGACTTTTTTACCATAAGCCTAAATTTGCAATTCTAGATGAATGCACAAGTGCTCGTTTTTGTGCTAAAGTTAGGGCCATGGGAACATCTTGCATTACCATATCTCATCGCCCAGCATTGGTTGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGGGAGGGCTCTTCTACTAAAATGGGTATTGATACAATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAAGCAGTTCAAATTGCATTTTCCATGAGCAAAAAGGATTCTGCATTCTCTAGTCCAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCAATGAATCATATAATTTCACCATCTACTGTTCCCCAACTCCGTGGTAACACAAGGGTATTGCCATTGAGAGTAGCTGCCATGTGCAAAGTGTTGGTACCCACTGTACTTGATAAACAAGGTGCACAACTGCTTGCTGTCGCTTTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTGATTGGTTTAAGTGTTCTTCAAAGTGCTGCATCTTCTTTCATTGCTCCTTCTTTAAGGCACTTGACAGCCAGGTTGGCCCTGGGGTGGCGGATTCGTTTGACGCAACATCTGCTAAAAAACTACTTGAGAAACAATGCATTCTACAAGGTCTTTCACATGGCAAGCAAAAATATTGATGCAGATCAGAGGATAACTAACGACTTGGAGAAGTTAACAGCAGACTTGTCTGGATTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTGTTAACAGGTCAGAGGGGGGTTGCCATACTCTATACTTACATGTTACTTGGTCTGGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTCGGTGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAAAGAGCTTCTCTCCCACTCGAATTACCTTTTAAAAAAGAAGTGGCTATTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTACTGAGCTTATTATATGCCATGGAACATAAGGGAGACCGTGCTTCAATAAGTACTCAGGGTGAGCTGGCGCATGCGTTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAATTGCACAGAAAGTTTGTGGAGCTTTCTGGTGGTATTAGTCGGATTTTTGAGCTTGAAGAACTTCTTGATGCAGCACAGTCTGGGGACTCCATCAATGATAGTATTACACCTTCAATGATGGATTATCATGCTAAAGATGCTATTTCGTTTTCTAAGGTTGATATTGTAACCCCTGCTCAGAAGATGTTGGCAAGGGAGTTGACATGTGACATTGAGCTTGGTAGAAGCCTGCTTGTTACGGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGATTCTCCAGACCATCTGAAGATGTGGATCAAGAGGCTGGATCAGATTGTGGCATCTTCTATGTTCCTCAGCGGCCTTACACATGCTTGGGAACATTGCGGGATCAAATTATATACCCACTGTCCCGTGAAGAAGCAGAGTTTAGAGCGTTGACGATGTACGGAAAAGGCGAAAATCATCCTGACCCTAGAAAATTGTTGGACACGCACTTGCAAACTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAAAGGGACAACAATGGATGGGATGCAAATCTCAACTGGGAAGACACCCTCTCTCTTGGAGAGCAGCAGAGATTAGGCATGGCACGTTTGTTCTTCCATAAGCCTAAATATGGTATCCTGGCGAGTGTACCAATGCAACTAGCGTTGATGTCGAAGAACACCTATATGGGCTTGCAAACAAAATGGGAATCACAGTGGTTACTTCCTCACAACGTCCTGCTTTAA 3912 0.4141 MSSLQLLHLTRNGQSFLASRRKALLLTSGILFAGGTAAYMQSRFRANKHDLFDHCNGHNNEKDTEEEVVKSVNAPKNKQKKGLKSLQVLAAILLSKMGKLGARDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLKLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGERKEESHIQQKFKTLVRHMHKVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRDLSLVDEKSSLQRKGSKNCISEANYIEFYGVKVVTPTGNVLVDDLTLRVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGYIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPFTIDQEVERLTDHGMVELLKNVDLEYLLDRYPPDKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSARFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSTKMGIDTMKASETKRQSDAKAVQIAFSMSKKDSAFSSPKAQSYFAEVISSSPSMNHIISPSTVPQLRGNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASSFIAPSLRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMASKNIDADQRITNDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFKELLSHSNYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGISRIFELEELLDAAQSGDSINDSITPSMMDYHAKDAISFSKVDIVTPAQKMLARELTCDIELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRFSRPSEDVDQEAGSDCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALTMYGKGENHPDPRKLLDTHLQTILENVRLNYLLERDNNGWDANLNWEDTLSLGEQQRLGMARLFFHKPKYGILASVPMQLALMSKNTYMGLQTKWESQWLLPHNVLL 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00199 1303 Gene3D - 1082 1270 IPR027417 -
Cca01g00199 1303 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00199 1303 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 80 608 - -
Cca01g00199 1303 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 590 1269 - -
Cca01g00199 1303 Pfam ABC transporter 462 607 IPR003439 GO:0005524
Cca01g00199 1303 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 445 678 IPR003439 GO:0005524
Cca01g00199 1303 Gene3D ABC transporter type 1, transmembrane domain 99 420 IPR036640 GO:0005524|GO:0016021
Cca01g00199 1303 Pfam ABC transporter transmembrane region 2 737 1002 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00199 1303 Pfam ABC transporter transmembrane region 2 89 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00199 1303 CDD ABCD_peroxisomal_ALDP 445 646 - -
Cca01g00199 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1269 IPR027417 -
Cca01g00199 1303 SUPERFAMILY ABC transporter transmembrane region 113 415 IPR036640 GO:0005524|GO:0016021
Cca01g00199 1303 Gene3D - 431 696 IPR027417 -
Cca01g00199 1303 ProSitePatterns ABC transporters family signature. 579 593 IPR017871 GO:0005524
Cca01g00199 1303 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 80 608 - -
Cca01g00199 1303 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 590 1269 - -
Cca01g00199 1303 SUPERFAMILY ABC transporter transmembrane region 752 1005 IPR036640 GO:0005524|GO:0016021
Cca01g00199 1303 SMART AAA_5 470 642 IPR003593 -
Cca01g00199 1303 Pfam ABC transporter 1108 1268 IPR003439 GO:0005524
Cca01g00199 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 642 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00199 Cca-Chr1 1950388 1966465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00199 68 648 Acyl Lipid Metabolism Gene Families AT4G39850 34.084 7.84e-97 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00199 K25819 - gmx:100813765 2355.1