Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00196 ATGGGAAAAAGACAATCTCTGCGTAACAAAGCCACCCAATTTGTCTCTGTCCTTCTCAACCCCATCTCTGATTCCGACACTCAAAATCCCAAATCTCAaccgacaccaacaccaacaccgacaccgacactaactccTTCAGGAGAAGTAGGTGAATCAGGGACAAGTGATGAAGAGGGTAACAAAAACCATGGTTTAGTGGATGAAGGACCTGACACATCATCCTTCACTGCGTTCCTCTATTCCTTATTGTCTTCCTCCGACACCGGAGATAACGCAAATTCGCACGTGCAGAGTGATGATAAAGCTGCAAACTCGAGCATGAAGGAAAATGGTGGGAGGAAAAGTTTGTTTTCAAGGAGCAAGCAATCACTGGGTAGAGCCATTCGCCAAGCTGCGAGAATGGGTGGATTTCGCCACCAAGATCGAAAGGATAATGTTGATGATGATGGGAATGGTTCTAGGGTTTCTGGAGTTGAGATGAGGCGTGTTGAGCCTCTGACTGTGCCTTTGGTTGATCTCCCTGAAATCTCTGAACCTTCAATTCTGCTTTCGGACAGTATAAGGAATGTTCTCTATGTTTCTCTTCCACCTCTAATTCACGGAAGGAAATGGCTGTTGCTATACAGCACTTGGAGGCACGGTATATCACTCTCCACTCTTTACCGGAGAAGCATGCTTTGGCCTGGATTGAGTTTGCTGGTTGTTGGAGATAAAAAAGGAGCAGTATTTGCCAGCTTGGTTGAAGCACCCCTTAAATCTTCCAGCAAGAAAAAATACCAGGGAACAAACAATACTTTTGTTTTCACAAATATCTCTGGTCTTCCTGTTATATATCGTCCAACAGGGGTAAACCGCTATTTCACACTTTGCAACACTGACTACTTAGCAATTGGCGGAGGAGGTCATTTTGCGCTTTATTTGGATGGTGATCTATTAAATGGTTCAAGTTCAGTCTCAGAAACTTATGGGAATCCTTGCCTTGCAAATTCTCAAGACTTTGAAGTGAAGGAAGTAGAGTTATGGGGCTTTGTATATGCTTCAAAATACGAGGAAGTACTTGCAATGAGCAGAACAGAAGCATCTGGGATCTGCCGATGGTAA 1104 0.4221 MGKRQSLRNKATQFVSVLLNPISDSDTQNPKSQPTPTPTPTPTLTPSGEVGESGTSDEEGNKNHGLVDEGPDTSSFTAFLYSLLSSSDTGDNANSHVQSDDKAANSSMKENGGRKSLFSRSKQSLGRAIRQAARMGGFRHQDRKDNVDDDGNGSRVSGVEMRRVEPLTVPLVDLPEISEPSILLSDSIRNVLYVSLPPLIHGRKWLLLYSTWRHGISLSTLYRRSMLWPGLSLLVVGDKKGAVFASLVEAPLKSSSKKKYQGTNNTFVFTNISGLPVIYRPTGVNRYFTLCNTDYLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLANSQDFEVKEVELWGFVYASKYEEVLAMSRTEASGICRW 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00196 367 MobiDBLite consensus disorder prediction 89 156 - -
Cca01g00196 367 SMART 109ultra 181 345 IPR006571 -
Cca01g00196 367 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 361 - -
Cca01g00196 367 ProSiteProfiles TLDc domain profile. 182 345 IPR006571 -
Cca01g00196 367 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 361 - -
Cca01g00196 367 MobiDBLite consensus disorder prediction 136 151 - -
Cca01g00196 367 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g00196 367 Pfam TLD 207 344 IPR006571 -
Cca01g00196 367 MobiDBLite consensus disorder prediction 1 71 - -
Cca01g00196 367 MobiDBLite consensus disorder prediction 89 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00196 Cca-Chr1 1932191 1936065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00196 204 352 EF-hand Containing Proteins AT5G06260 29.560 5.32e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00196 - - gmx:100804124 608.216