Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00191 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTCGGCGACCAATTCCCCGAAGGAGAGCGTTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCCCTATACttctgcgttccatttcgagaacaattgctagagtattatgcaaataacaagagcatggcggatgcagaggaaaatcttttgacttgcttagctgacttattttcacagATAAGTTCCCAGAAGAAGAAAACGGGTGTCATTGCTCCCAAACGATTTGTGCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGTTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGACTGCAAAAAATGATCAAGAGACCTCGCCACCTTCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAAACTAGGTGCCTGCGATGTGAAACTGTAACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACTGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATTCACCTTAAGCGGTTTAAATACATCGAACAGCTGGGTCGATACAAGAAGTTGTCTTACCGAGTTGTTTTCCCTCTTGAGCTGAAATTGAGTGATACTGCTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCAAACCACGGGCACTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCGCAAGAGTATTCCAGCAATACAGATCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAAAAACTAG 1110 0.3766 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSMADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQTAKNDQETSPPSEKAANGPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNKN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00191 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Cca01g00191 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Cca01g00191 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Cca01g00191 369 CDD Peptidase_C19G 24 361 - -
Cca01g00191 369 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 367 - -
Cca01g00191 369 Gene3D Cysteine proteinases 5 362 - -
Cca01g00191 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Cca01g00191 369 MobiDBLite consensus disorder prediction 133 159 - -
Cca01g00191 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 367 - -
Cca01g00191 369 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00191 Cca-Chr1 1896023 1901670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00191 24 334 Miscellaneous Gene Families AT4G31670 26.646 3.73e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00191 K11842 - gmx:100787737 745.347