Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00180 ATGACGTCTTCGGTGCTTGAGGGTGGACGCGACGAGGTCAAACGCGAGCCCTCCGATTTGGTCGCGGAAGCCATTAATCTGACGGCCACGAATCTTTCGCTTCCCGCTGAAACGTTTCTCAGAGCGGCGATTTCGCTCAAGGACAAGGTGGTGGAGGAGACTTGGAATCGGCGAGATCAAGTGGTTGATCCGACGGTGTACACGGGACTCTTGGGCACCGCCTTCACTTGCTTCCGCTCGTACCAGATTACCGGTTGCCGGAACGACTTGCTATTGTGCACTGAGATTATTGACACGTGTGTAACGGCTGCACGTGACTCCCTTAGACACGTGACTTTTTTGTGCGGTAGAGGAGGCGTTTATGCGCTTGGTGCTGTCGTTGCCTATTACATGGAGGATCTTCCAAAGCGTGACCAGTTTTTGGGTCTATTCATTGAGGTGGGAAAAGAGAGAGCCCTCCCAGTTGGACCAGAGGAAGGTGGTTTTGGAATGTCATATGATCTTCTGTATGGGCGAGCTGGATTCTTATGGGGTGCATTATTCGTGAACAAACACTTGGGAGAAGATGCTGTGCCCAAAGAAATTCTGATGCCTATTATTGATGCTGTGTTGGCTGGTGGTAGAGCAGGAGCATCTGATATTAAAGACTGTCCATTGATGTATAGATGGCACGGAACTAGATACTTAGGTGCAGCAAATGGCCTTGCTGGTATTCTTCATGTGCTGCTTCATTTTCCACTTCCTAGTGAGGATGCTGAGGATGTCAAGGGAACATTGAAGTACCTCATGAGTAAGCGTTTCCCTCACAGTGGAAACTACCCCTCAAGTGAAGGGAATCCAAGGGATAAGTTGGTGCAGTGGGGTCATGGGGCAACTGGCATGGCCATCACTTTGTCCAAAGCAGCACAGTTATTTCCTAATGACAGAGAACTACGAGATGCTGCAATAGAAGCAGGGGAAGTTGTGTGGAAGAGTGGATTGGTGAAGAAGGTGGGACTTGCTGATGGGGTATCTGGAAATGCCTATGCCTTCCTATCCCTCTATCGACTCACTAAAGAGAGTATATACGAAGAGAGAGCAAAATCATTCTCTTCCTTCTTGTATGACAATGCAAGATCTCTGGCTGCTGCAAATGGCTATTCACTTTTCCAAGGACTTGCTGGCACAGCATGCCTCTGGTTTGATCTGCTTGCACCCGAAAACTCAAGGTTTCCAGGCTATGAATTATAG 1230 0.4878 MTSSVLEGGRDEVKREPSDLVAEAINLTATNLSLPAETFLRAAISLKDKVVEETWNRRDQVVDPTVYTGLLGTAFTCFRSYQITGCRNDLLLCTEIIDTCVTAARDSLRHVTFLCGRGGVYALGAVVAYYMEDLPKRDQFLGLFIEVGKERALPVGPEEGGFGMSYDLLYGRAGFLWGALFVNKHLGEDAVPKEILMPIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLKYLMSKRFPHSGNYPSSEGNPRDKLVQWGHGATGMAITLSKAAQLFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYRLTKESIYEERAKSFSSFLYDNARSLAAANGYSLFQGLAGTACLWFDLLAPENSRFPGYEL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00180 409 PANTHER LANC-LIKE PROTEIN GCL1 18 409 - -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 63 81 IPR007822 -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 166 181 IPR007822 -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 228 244 IPR007822 -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 284 304 IPR007822 -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 331 344 IPR007822 -
Cca01g00180 409 PRINTS LanC-like protein superfamily signature 379 396 IPR007822 -
Cca01g00180 409 Gene3D - 16 409 IPR012341 GO:0005975
Cca01g00180 409 SMART LANC_like_2 60 409 IPR007822 -
Cca01g00180 409 PRINTS Eukaryotic LanC-like protein family signature 196 211 IPR020464 -
Cca01g00180 409 PRINTS Eukaryotic LanC-like protein family signature 264 279 IPR020464 -
Cca01g00180 409 PRINTS Eukaryotic LanC-like protein family signature 302 323 IPR020464 -
Cca01g00180 409 PRINTS Eukaryotic LanC-like protein family signature 347 365 IPR020464 -
Cca01g00180 409 PRINTS Eukaryotic LanC-like protein family signature 395 409 IPR020464 -
Cca01g00180 409 CDD euk_LANCL 66 405 - -
Cca01g00180 409 Pfam Lanthionine synthetase C-like protein 61 409 IPR007822 -
Cca01g00180 409 PANTHER LANC-LIKE PROTEIN 18 409 - -
Cca01g00180 409 SUPERFAMILY LanC-like 53 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00180 Cca-Chr1 1791198 1796886 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00180 - - gmx:100785406 765.377