Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00178 ATGGCGTTTTATTCTGCAACTCAGCTTAGGAACAAGAGACCAAAGTCTTTCGAGatggcccgtacaaaacaaactgctcgtaagtcaactggaggaaaagctcccaggaagcagcttgcaACCAAGGCTGCGCGTAAGTCTGCACCAACAACTGGGGGTGTGAAGAAGCCACATCGTTATCGTCCTGGAACTGTTGCTCTTCGGTCAATTAGGAAATACCAGAAGAGTACTGAGCTTCTTATCAGGAAGCTTCCATTCCAGAGGTTGGTTCGTGAAATTGCTCAGGATTTCAAGACTGACCTCCGTTTCCAGAGCCATGCTGTGCTTGCGTTgcaagaggctgccgaggcataccttgttgggctctttgaggacaccaacttgtgtgccatccatgccaaGCGTGTGACTATTATGCCCAAGGATATCCAGCTAGCAAGGAGGATCCGTGATTCTGCAACTCAGTTTCTGAACAAGAGACCAGAGTCGTTTGAGatggcccgtacaaagcaaactgctcgtaagtcaactggaggaaaagctcccaggaagcagcttgcaACCAAGGCTGCGCGTAAGTCTGCACCAACAACTGGGGGTGTGAAGAAGCCACATCGATATCGTCCCGGAACTGTTGCTCTTCGGTCAATTAGGAAATACCAGAAGAGTACTGAGCTTCTTATCAGGAAGCTCCCATTCCAGAGGTTGGTTCGTGAAATTGCTCAGGATTTCAAGACTGATCTTCGTTTCCAGAGCCATGCTGTGCTTGCGTTgcaagaggctgccgaggcatacctcgttgggctctttgaggacaccaacttgtgtgccattcatgccaaGCGTGTGACTATTATGCCCAAGGATATCCAGCTAGCAAGGAGGATCCGTGGGGAGCGTGCTTGA 906 0.3433 MAFYSATQLRNKRPKSFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALRSIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRDSATQFLNKRPESFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALRSIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00178 301 SMART h35 52 154 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 SMART h35 199 301 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 Pfam Core histone H2A/H2B/H3/H4 166 297 IPR007125 GO:0003677
Cca01g00178 301 Pfam Core histone H2A/H2B/H3/H4 19 150 IPR007125 GO:0003677
Cca01g00178 301 SUPERFAMILY Histone-fold 167 298 IPR009072 GO:0046982
Cca01g00178 301 Gene3D Histone, subunit A 167 301 IPR009072 GO:0046982
Cca01g00178 301 Gene3D Histone, subunit A 20 153 IPR009072 GO:0046982
Cca01g00178 301 PRINTS Histone H3 signature 245 263 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 263 279 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 279 300 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 182 196 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 199 220 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 223 240 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PRINTS Histone H3 signature 168 182 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PANTHER - 160 301 - -
Cca01g00178 301 PANTHER - 12 151 - -
Cca01g00178 301 ProSitePatterns Histone H3 signature 1. 33 39 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PANTHER HISTONE H3 160 301 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 PANTHER HISTONE H3 12 151 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 ProSitePatterns Histone H3 signature 2. 85 93 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 ProSitePatterns Histone H3 signature 2. 232 240 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 ProSitePatterns Histone H3 signature 1. 180 186 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca01g00178 301 MobiDBLite consensus disorder prediction 166 207 - -
Cca01g00178 301 MobiDBLite consensus disorder prediction 1 61 - -
Cca01g00178 301 SUPERFAMILY Histone-fold 20 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00178 Cca-Chr1 1764388 1771318 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00178 K11253 - arut:117971343 497.664