Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00171 ATGGGACTTGTTTTTACCAAATGGGCATGTGCATTCTTACTCTGCTGTTGTCTCATCACTTCTGGGGTATATTCAGTGGAGGGTTTACATGGGAGTTCTAATGTGAGAGGAGTGAACTTAGGAGGGTGGCTGGTTATTGAAGGTTGGATCAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTAGATGGGACAGAGGTTCAATTTAAGTCAGTGACGTTGCAGAAGTATGTATCTGCTGACAATGGAGGAGGAATGAATGTGACAGTTGACAGGGATGTCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCTAAGTCAGAATTTCAATTTCGTACCTCCGAAGGCCAGTTTCTTACATGTGATGGTGTAGGCAGCTCTGTCTCTGCAACAGCAAAATCCCCTTCAAAATCAGAGACATATGAAATTGAGCGGAATGAAAAGAGTAGGATTCACATCAAGATAAAGGATGGTGCATATCTTCAGGCTACAACAGATGGTCACCTTACGGCAGACTACCCAGGTACACCAGGATGGGATGATAATGCTGCCACGTTTGAAATGACAATTGTATCAAATAGCTTGCATGGAGATTACCAGCTAGCCAATGGATATGGGCATGATCAAGCAAAGGATGTTCTTAGGAGACATAGAAATAGCTTTATCACCATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCAGGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCTTTTTCATGGGCACAAGAATATGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGGGATGGATTTACTGGCTGGCCAACTTCTCCAGATTACATTTCTCAGTCATTACATGCTATTGATTTTTTAGTTTCTAGGTATGCAAGACATCCTGCATTGCTAGGAATTGAGCTATTGAATGAACCAGCTGCTGGCGCAGTTTCATTAGATGTTTTAATATCATATTACAAGCAGGGCTACCAAATAGTTCAAAAATACTCGTCATCAGCTTATGTGATAATCTGCCAGAGAATTGGTGCTGCAGATCCTTTGGAACTTTATCAAGCCAACATAGGATCTCACAACCTAGTTTTGGATTTGCATTTCTACAATCTCTTTGACACATTTTTTGTTAATATGAGCGCTGTGGATAATATACAATACATATACAAAAGCAGGGAAGGTCAATTGCAGGCCTTAAACAATTCAAATGGCCCACTTGTTTTAGTTGGAGAGTGGGTGAATGAGTGGAACGTGACAAACGGATCCAAAAATGATTATCAAGACTTTGGAAAGGCACAGTTAGATGTCTATAATGCAGCTTCCTTTGGATGGTGCTATTGGACTCTAAAAAATGACAGAGAGCACTGGGATTTTGAATGGAACATTAGAAACAACTATCTTCAATTAGGAAACTCACCTAGGAAATGGAGCTTGAACATTCTAGGATTATTATTAGGATTGGCATGCACCTGGTTATGTCTTCCATTTTTGTGA 1602 0.4051 MGLVFTKWACAFLLCCCLITSGVYSVEGLHGSSNVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQFKSVTLQKYVSADNGGGMNVTVDRDVPSSWETFRLWRVSKSEFQFRTSEGQFLTCDGVGSSVSATAKSPSKSETYEIERNEKSRIHIKIKDGAYLQATTDGHLTADYPGTPGWDDNAATFEMTIVSNSLHGDYQLANGYGHDQAKDVLRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDYISQSLHAIDFLVSRYARHPALLGIELLNEPAAGAVSLDVLISYYKQGYQIVQKYSSSAYVIICQRIGAADPLELYQANIGSHNLVLDLHFYNLFDTFFVNMSAVDNIQYIYKSREGQLQALNNSNGPLVLVGEWVNEWNVTNGSKNDYQDFGKAQLDVYNAASFGWCYWTLKNDREHWDFEWNIRNNYLQLGNSPRKWSLNILGLLLGLACTWLCLPFL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00171 533 SUPERFAMILY Actin-crosslinking proteins 69 189 IPR008999 -
Cca01g00171 533 PANTHER FASCIN 24 511 IPR010431 GO:0007015|GO:0051015
Cca01g00171 533 Pfam Cellulase (glycosyl hydrolase family 5) 226 488 IPR001547 GO:0004553|GO:0071704
Cca01g00171 533 Gene3D Glycosidases 187 513 - -
Cca01g00171 533 SUPERFAMILY (Trans)glycosidases 35 509 IPR017853 -
Cca01g00171 533 PANTHER - 24 511 - -
Cca01g00171 533 Gene3D - 47 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00171 Cca-Chr1 1651069 1656533 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00171 - - gmx:100809472 993.03