Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00168 ATGAGGAAACTGAAACTGAAAGAGGTGATAGGGATAATGAAAGACAAGGCTTCACAAGGTAAAGCTGCGATTCTCTCCAAACGCGCCACACTCTCTCTCCTACGCGCCACCGGCCACGACTCTTTCACCCCTCCCACGCGCAAGGACCTCTCCACGCTCCTTGCCTCCGGCGATGGTTCACGTTCCACGGCTGCCGCCGCCATGGAGCTTCTGATGGACCGCCTCCAGACGACGCAGAACTCCGCCGTGGCCCTGAAGTGCCTTGTCGCCGTCCACCATGTCATCAAGCACGGTAGCTTCATCCTGCGCGACCAGCTTCCCTACAGCGGTGGCAGAAACCACCTTAACCTCTCCAAATTCCGCGACAGGAGTAGCCCGGTGTCGTGGGGACTCTCTGCTTGGGTCCGATGGTACGCCAGACATGTGGAACAGCTTCTTTGGGCCTCTAGAACTGTCGGGTTTTTTCTCAACACTGCACCAGAATCATCATCGGAAGTGAAAGTTTCGGGTCTGGCCAACGGTGAGTTGCTACGGGAGACGGAGGCTTTGTTGGCGGTGGTTGAGGGGATTGGAGAAATACCCGACCATGTGTCCACAGAAGGGAACAAGTTAGTTGCTGAGATAGAGAGTTTGGTGGAAGAGGATGTGGTTGCGGTGTTGAGTGAGGTTTTTGTTAGGGTTAACGAGTTTAGGGAGAGGTTGGGGTGTCTATGTTTTGGAGAAGTGGTGGAGTTGGTTTACGTGATGAATAGATTGGAGAAGTGCAAAGAGAGAGTGGTGGTGGTGGAGAAGCAGAGGTTATGGGATTCAGTGAGAGAGTTGAAGGAGAAAGTGAAGAAAATGGAGGTGTATAGAGAAGAACAGAAAACAGTGACTACACACAGGACGACCAAGTCAGATAGGTTTGATCTTAAGTTTCTCAAATCTCTTGATTTGGTCCGGTTCCCCTCAACAAGGTTATTGTAA 966 0.5186 MRKLKLKEVIGIMKDKASQGKAAILSKRATLSLLRATGHDSFTPPTRKDLSTLLASGDGSRSTAAAAMELLMDRLQTTQNSAVALKCLVAVHHVIKHGSFILRDQLPYSGGRNHLNLSKFRDRSSPVSWGLSAWVRWYARHVEQLLWASRTVGFFLNTAPESSSEVKVSGLANGELLRETEALLAVVEGIGEIPDHVSTEGNKLVAEIESLVEEDVVAVLSEVFVRVNEFRERLGCLCFGEVVELVYVMNRLEKCKERVVVVEKQRLWDSVRELKEKVKKMEVYREEQKTVTTHRTTKSDRFDLKFLKSLDLVRFPSTRLL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00168 321 ProSiteProfiles ENTH domain profile. 21 156 IPR013809 -
Cca01g00168 321 Gene3D - 3 155 IPR008942 -
Cca01g00168 321 CDD ANTH_N_AP180_plant 31 149 - -
Cca01g00168 321 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 320 IPR045192 GO:0048268|GO:0072583
Cca01g00168 321 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 320 - -
Cca01g00168 321 SUPERFAMILY ENTH/VHS domain 31 153 IPR008942 -
Cca01g00168 321 SMART enth_2 27 156 IPR013809 -
Cca01g00168 321 Pfam ANTH domain 32 184 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00168 Cca-Chr1 1629540 1631278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00168 - K20043 gmx:100804331 447.973