Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00163 ATGGGGATCGTCACTCGCAGTTCTGTTGGTAGAAAACCAAGTGAAATTATGAGGATTTTTGTGACAGCTTTTATTGGTTTAGTTTTTGGATTCTTTATAGGAGTATCGTTTCCAACATTGTCAATAACAAAGTTGAATCTCCCATCTGGCCTCCTTCCCTCCATTGATCTTTCTTACATTGAAGGCAAATATACAGGTCGCCAGGCTTGGTCTTTTATGAATAGTAGTAACAGAAGAAGTTCACCACATGTTCAATTATCAAATGATACATCAAAGATTTGGGTTCCATCAAATCCTAGAGGTGCAGAAAGATTACCTCCTGGCATTGTTGAAGCTGAGTCGGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGATCTAACGTCCAAACCAAATTACCTTGTAACCTTCACTGTTGGGTATGATCAGAAAAGCAATATAGATGCAGCTGTTAAAAAGTTTTCAGGGAACTTCACGATCCTTCTGTTTCATTATGATGGCCGAACCACTGAATGGGATGAGTTTGAATGGTCAAAGCGGGCGATTCATGTGAGTGCTCGCAAACAGACCAAATGGTGGTATGCCAAGCGGTTTCTGCATCCTGACATTGTGGCACCTTATGACTATATATTCATATGGGATGAAGACCTGGGTGTTGAGCATTTTAATGCTGAAGAGTACATAAAACTGGTGAGGAAGCATGGCTTGGAGATTTCTCAGCCTGGCTTGGAACCTAATAAAGGATTGACATGGCAAATGACGAAAAGAAGAGGTGATCGTGAAGTTCACAAGGTGACAGAGGAAAAACCAGGATGGTGTTCTGACCCTCATTTACCTCCTTGCGCAGCGTTTGTTGAGATCATGGCTCCAGTGTTCTCCCGAGATGCATGGCGCTGCGTATGGCATTTGATTCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAGATGTGTTGAGCCCGCGCACGAAAAGATTGGAGTTGTTGATTCTCAGTGGATAGTTCACCAAGGTGTTCCCTCACTAGGGAATCAGGGTGAATCTCAAACAGGGAAAGCGCCATGGCAGGGGGTGAGGGAGAGGTGTAGAAAAGAGTGGACAATGTTCCAGAGTCGGTTAGCAATTGCGGAAAGCGCGTATTACAAGTCCATTGGAGCTGATATATCTAATTCCACTGCTCATTAA 1200 0.4367 MGIVTRSSVGRKPSEIMRIFVTAFIGLVFGFFIGVSFPTLSITKLNLPSGLLPSIDLSYIEGKYTGRQAWSFMNSSNRRSSPHVQLSNDTSKIWVPSNPRGAERLPPGIVEAESDFYLRRLWGKPSEDLTSKPNYLVTFTVGYDQKSNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAEEYIKLVRKHGLEISQPGLEPNKGLTWQMTKRRGDREVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSRDAWRCVWHLIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIVHQGVPSLGNQGESQTGKAPWQGVRERCRKEWTMFQSRLAIAESAYYKSIGADISNSTAH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00163 399 PANTHER OS06G0731900 PROTEIN 1 398 IPR007877 -
Cca01g00163 399 Pfam Protein of unknown function (DUF707) 97 382 IPR007877 -
Cca01g00163 399 PANTHER BNAA02G13400D PROTEIN 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00163 Cca-Chr1 1589799 1594926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00163 - - gmx:100778486 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00163 01 1589799 1594926 Cca01g00163 01 1589799 1594926 ECH
Cca09g02093 09 45940759 45949423 Cca01g00163 01 1589799 1594926 PCT