Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00159 ATGGCGGAGCTCCGCCACTCCTCCTCCCTCGGCAGCCGCGCCTCATCCTCTCCGATGAAGCGCGACGCCGCCGGCGCTGCCGTCGCCGATTCCTCCCCTCTCATTCCCGACAGCCACCTCGCCCACGACGACGACGAGCACGATCGCCACTCCTCCAAGGACCGCGACCGCCACCTCTGCTCCTTCTTCACCGACGACCCTAGGGTTTCCCCTCACTACTCCAGGATCTCTCTCTGTTTCACCTTCCTTCTTATTCTCGTCGGTTTGTTCTCCGTCTTCACAATCTTCCATAAACTCAATGCGCCTTACTTGTGTAAAAAGGATGGGATTGTTCTTCACTGCCCACATGTTAAAGAGTCTCCATCACTTTGGGAAAATCCTTTTTCATCCACAACATCTTGGAAGCCCTGTGCTGAGCGCCGGGATGGTGATATAACAGAACTTCCCCCTGAAAATGAAACAAATGGCTATATATTCATCCATGCTGAAGGTGGTTTAAATCAGCAAAGAATTGCGATATGCAATGCAGTGGCTGTGGCAAAAATAATGAATGCCACTCTTATTTTGCCTGTTTTGAAGCAGGACCAGATTTGGAAGGACCAAACGAAATTTGAAGACATTTTTGATGTGGATCACTTCATTGACTACCTGAAATATGATGTTCGTATTGTCCGTGATATCCCAGAATGGTTTACTGATAAATCAGAGCTATTTACTAGCATAAGGCGGACTGTAAAAAACATTCCAAAATATGCACCGGCACAATTTTATATTGACAATGTTCTGCCCCGAATCAAGGAGAAGAAGATTATGGCTCTGAAACCGTTTGTTGACAGGCTGGGATATGACAACGTTCCACCTGAAATCAACAAGTTGAGATGTAGAGTCAATTATCATGCTCTGAAATTTCTTCCTGATATAGAAGAGATGGCTGATTCACTAGCATCAAGGATGAGAAATCGAACAGGCAGTTCTAATCCTTATATGGCTCTGCATCTTAGATTTGAGAAAGGAATGGTGGGACTATCATTCTGTGATTTTGTGGGGACAAGAGAGGAGAAGGCTAAAATGGCTGAGTATAGAAAAAAGGAATGGCCTCGACGGTACAAGAATGGTTCCCATCTGTGGCAATTAGCTCTGCAGAAGCGAAAGGAAGGAAGATGTCCTCTAGAGCCTGGAGAAGTGGCTGTTATTCTTCGTGCCATGGGCTATCCAAAAGAAACTCAAATTTACGTAGCTTCCGGACAGGTGTATGGTGGACAGAACAGGATGGCTCCGCTAAGGAATATGTTCCCTAATCTGGTTACCAAGGAGGAGTTGGCAACTAAAGAGGAGTTAGATGGTTTCAGAAAGCATGTGACGAGCCTAGCAGCTCTTGACTTCTTGGTGTGCTTGAAATCAGATGTATTTGTGATGACCCATGGAGGCAACTTTGCTAAGCTGATCATTGGGGCTCGTAGATACATGGGTCACCGTCTAAAATCAATTAAGCCTGACAAAGGGCTAATGTCCAAGTCTTTTGGGGATCCATACATGGGTTGGGCTACTTTTGTAGAAGATGTTGTTGTTACGCACCAGACACGGACGGGATTGCCAGAAGAGACTTTCCCTAACTATGACCTCTGGGAGAACCCTCTGACTCCTTGCATGTGTAGAGCCTGA 1662 0.4639 MAELRHSSSLGSRASSSPMKRDAAGAAVADSSPLIPDSHLAHDDDEHDRHSSKDRDRHLCSFFTDDPRVSPHYSRISLCFTFLLILVGLFSVFTIFHKLNAPYLCKKDGIVLHCPHVKESPSLWENPFSSTTSWKPCAERRDGDITELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKYDVRIVRDIPEWFTDKSELFTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINKLRCRVNYHALKFLPDIEEMADSLASRMRNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRLKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCRA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00159 553 CDD O-FucT_plant 157 492 IPR024709 -
Cca01g00159 553 MobiDBLite consensus disorder prediction 1 53 - -
Cca01g00159 553 Gene3D - 299 496 - -
Cca01g00159 553 PANTHER PROTEIN PECTIC ARABINOGALACTAN SYNTHESIS-RELATED 1 553 - -
Cca01g00159 553 MobiDBLite consensus disorder prediction 37 53 - -
Cca01g00159 553 Pfam GDP-fucose protein O-fucosyltransferase 157 489 IPR019378 -
Cca01g00159 553 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 1 553 - -
Cca01g00159 553 PIRSF UCP009360 37 553 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00159 Cca-Chr1 1556524 1563214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00159 121 551 Miscellaneous Gene Families AT2G37980 36.384 4.76e-93 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00159 - - gmx:100809112 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00159 01 1556524 1563214 Cca01g00159 01 1556524 1563214 ECH