Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00158 ATGGCGGAGCCGGTGAGGCTTCGCGTGGTGTTTGACGATCGTGGCATGTTGACCAAGTCAAAGAAGAAGGAAGGGTTGAAGCGTTGCTGGTTTATGCCTAAACCCCAACACACCACCATTTCCGATGTAGCCTCTCATCTTCACAGCACCTTCCGCCTCCACCGCACATGTCCTCATGGCATCATCTTATCGATGGATGGTTTTGTTTTGCCACCTTTCGAGTCCACATGCATTTTGAAGGACAAGGACATTATCCGTGCGAAGAGAAAGGGTAGCATATCAAGTGATGATAAACCTGCAATGCTGCCACCTGCAACTCGTGCGCAACAGTATATAGATCTTCCGAAGCTTCTTGCAATCGAAGGGCTTCAGGAGGAGACTGGAGGAGAAGAAACCGAGTCCCCAGGGGATAACGATGATCAACTTGAAGATGCAGTTTATGTGGAGGAACCTAAATCGGAGGGGACGGCAGTCTCCAAGAAAAGAAAAGCTTCAAAGAAGCTCAAGAGCCCTAGCCAGAAGAAGATCAAGTTGTCTACTACAGAAAACTTGGCAGTCATTCCCGAGGGCCACGAAGAGGAAAACAAAAGCTCTGATGGCAGTGCTCATCACCAATTGAGTCTTGTCAACAACGAAAAGAAGTCTTCCAAGTTATCCAGTCAGACAATTAAGTCGAACAAAAGTGGTCCTACAAGTGATGAAACAAGGTTTGCTCAGCCTCAAGATGAAAGTGAAACTAAAAAGTTGCCTAGTAGAAGTGCTCGGCGGAAGAAAGCTAAAAGAAGATGGCTGAGGGAACTAAAATTAGaggagaagcagaaggagaaggagaaggaaaagCTCCATCAGACTCCAGTGCTTGAAAATGATAGACAAGATTTATCTGTCAAAGATAACAATTGTGTTGTTTCTGATGTACGTCAACAACCTGATGAAGAAAGTGAAGAAGAGGATGATATTGTTCCTGTGGAAATTAGGCCAGGGCACATTCGGTTTGAGCCCCTTAAAAAAGATCTGGATCAGGCAGTGCCACAGAATAAATTTCCAGTGGAAACATTTCAGTGGAATGGAATTACCAACAAGAAGAAGGGCCAAAAATGGGGTACAGAGAGAATGTCATCCCATAAACAGGATGACTACAAACATGCCAATATAGAGTATCCTACATCTCAGAATGTTGAAAAGGAATTCACATTCAAGGCAGGAGATTTTGATAAGCTTAAACCTTATACAAGCTTGCCTAAGGAAGGTGACGTAATTGCGTATCGATTGATAGAGCTATCAGAATCTTGGTCTCCTGAACTTTCCTCCTTTAGGGTTGGGAAAATATCTCAGTATGATGCTAAATCCAACAGGATTTGGCTGGAAGCACTTTCAGAATATCCATTTGATTTTAAGAAAAAAATAGACGAGGATGCATCTTCTGTACAGTCTGATCCATACCCTTATCGGGAAGATGGTTCTTTAGAGATAGATTATGCATTGCTTGCTGACATTCGCATGGTTAAGCATGGTCATTCTGGTTCGAAAACTGTAGTTGTTTCTAGTGATGGTTGGGTCAATTTAACAAAAGCAACTGATGAAAAAATTGCGAGTGAGCAAACTACCGTGGGAAGTTGCCAGCCTGAAAGGGAAGTTCATATCCCTGCTAAAGGTAATGTACATTTTACGATTCTTGGAGTGTATGGTGTAGTATAG 1698 0.4223 MAEPVRLRVVFDDRGMLTKSKKKEGLKRCWFMPKPQHTTISDVASHLHSTFRLHRTCPHGIILSMDGFVLPPFESTCILKDKDIIRAKRKGSISSDDKPAMLPPATRAQQYIDLPKLLAIEGLQEETGGEETESPGDNDDQLEDAVYVEEPKSEGTAVSKKRKASKKLKSPSQKKIKLSTTENLAVIPEGHEEENKSSDGSAHHQLSLVNNEKKSSKLSSQTIKSNKSGPTSDETRFAQPQDESETKKLPSRSARRKKAKRRWLRELKLEEKQKEKEKEKLHQTPVLENDRQDLSVKDNNCVVSDVRQQPDEESEEEDDIVPVEIRPGHIRFEPLKKDLDQAVPQNKFPVETFQWNGITNKKKGQKWGTERMSSHKQDDYKHANIEYPTSQNVEKEFTFKAGDFDKLKPYTSLPKEGDVIAYRLIELSESWSPELSSFRVGKISQYDAKSNRIWLEALSEYPFDFKKKIDEDASSVQSDPYPYREDGSLEIDYALLADIRMVKHGHSGSKTVVVSSDGWVNLTKATDEKIASEQTTVGSCQPEREVHIPAKGNVHFTILGVYGVV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00158 565 MobiDBLite consensus disorder prediction 148 325 - -
Cca01g00158 565 Pfam Coilin N-terminus 5 278 IPR031722 -
Cca01g00158 565 MobiDBLite consensus disorder prediction 264 295 - -
Cca01g00158 565 PANTHER COILIN P80 1 527 IPR024822 -
Cca01g00158 565 Coils Coil 260 284 - -
Cca01g00158 565 MobiDBLite consensus disorder prediction 201 237 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00158 K13150 - gmx:100776892 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00158 01 1541150 1548400 Cca01g00158 01 1541150 1548400 ECH