Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00154 ATGGGTTGTTCATTTCCATTGAATATCCCTCTAGTAACAACAATAGTGCTCCTCTTGGGTGTGACACTCCTAACCAAGCCCATGGTTGTGACATCTTTTCCATTATTCACTCAAAATCGGTGGATAGTTGATGAAAAAGGGTCAAGGGTGAAGCTAGCATGTGTGAATTGGGTGTCACATTTGGAACCCATAGTGGCTGAGGGCTTAGGTGAGAGACCTTTGGATGTGATAGCCAATGAAATCAAATCCATGGGCTTCAACTGTGTTAGACTCACATGGCCTACTTTTTTGGTCACCAATAACTCTCTTGCTTCTCTTACTGTGAGACAATCTCTCAAAAATTTTGGCTTGTTTCAAGCCATCGTTGGTGTACAAGCCAACAACCCCTCTATTATTGATCTTCCCCTCATCAAAGCTTACCAGGCAGTGGTGAAAGGCTTAGGAGAGAAGGGTGTGATGGTGGTTTTGGACAACCACGTGTCGAAGCCACAGTGGTGCTGCAGTGGCAACGACGGCAATGGCTTCTTTGGGGACCAATATTTGGACCCTGAGGTATGGACTACGGGCCTTACCAACATGGCCACCCTTTTCAAAGGAGTCACTAATGTCGTAGCCATGAGCTTGAGAAACGAGCTACGAGGTCGTACACAAAATGCCAAACTCTGGTTCAGGTACATGCCAAGAGGAGCAGAAGTCGTGCATGCAGCAAATCCAGATGTTCTTGTAATTCTATCTGGCCTAAGTTATGATAGTGACCTATCATTTCTTAGAAACCAGGGAGTGAAACTCAGCTTTGACAGAAAACTAGTATTTGAGTTGCACTGGTATGCCTTCTTCAGCGGCTCAGCATGGATATTAAAGAACCTAAACCAAGTTTGCGGCCAAGTCACACAGAACATGATAGAAAGAGCAGGATACCTTTTGGAGCAAGGATATCCACTGTTTGTGAGTGAGTTTGGGAGAGACTTGAGAGGCACAAATGATAATGACAATAGGTACTTCAACTGCTTCATGGCAGTTGCAGCAGATCTTGACTTTGATTGGGCCTTGTGGACACTCATTGGGAGTTATTACTTAAGAGAAGGGATTTTAGGAGAAATCGAGGTTTATGGTATTCTTAATGTTAACACAACCCAAGTTACTGACCCAAGTTTCTTGCAAAGGATAGCTGCTCTTCAACTTCCCTATCAAGGGCCAGGATTACTGGAAGCTGAACACAAAGTGATTTTTCACCCATTGACAGGTCTTTGCATATTAATAAAGTCACAACAATTAGTGTTGGGATCCTGTTCTAATTCTGAGGCATGGGAATACACAATCCAGAAGGTGCTATCACTCAAGGGTGCAAATAGCACTTGTTTATTAGCAGATGGAGAAGGGAAGCAAGCAAAAGTTGGAAATGAATGTTTAGGTCCCAATTCAATATGGGAAATGATCTCTGATTCCAAGTTACACCTCTCAAGTAAAATCAACAATGCTTCTGATGTGTGTCTGGATGTAGATGCCAACAACAACATTGTCACCAATGCATGCAAATGCTTGAGCGATGATAAGAGGTGCGACCCTACTAGCCAATGGTTCAAACTTGTTAACAACACAAGAAAATCAACATCAACATTATTATATTAA 1629 0.4279 MGCSFPLNIPLVTTIVLLLGVTLLTKPMVVTSFPLFTQNRWIVDEKGSRVKLACVNWVSHLEPIVAEGLGERPLDVIANEIKSMGFNCVRLTWPTFLVTNNSLASLTVRQSLKNFGLFQAIVGVQANNPSIIDLPLIKAYQAVVKGLGEKGVMVVLDNHVSKPQWCCSGNDGNGFFGDQYLDPEVWTTGLTNMATLFKGVTNVVAMSLRNELRGRTQNAKLWFRYMPRGAEVVHAANPDVLVILSGLSYDSDLSFLRNQGVKLSFDRKLVFELHWYAFFSGSAWILKNLNQVCGQVTQNMIERAGYLLEQGYPLFVSEFGRDLRGTNDNDNRYFNCFMAVAADLDFDWALWTLIGSYYLREGILGEIEVYGILNVNTTQVTDPSFLQRIAALQLPYQGPGLLEAEHKVIFHPLTGLCILIKSQQLVLGSCSNSEAWEYTIQKVLSLKGANSTCLLADGEGKQAKVGNECLGPNSIWEMISDSKLHLSSKINNASDVCLDVDANNNIVTNACKCLSDDKRCDPTSQWFKLVNNTRKSTSTLLY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00154 542 Gene3D Glycosidases 33 390 - -
Cca01g00154 542 Pfam Cellulase (glycosyl hydrolase family 5) 73 353 IPR001547 GO:0004553|GO:0071704
Cca01g00154 542 SUPERFAMILY (Trans)glycosidases 34 385 IPR017853 -
Cca01g00154 542 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 15 538 - -
Cca01g00154 542 PANTHER CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) PROTEIN 15 538 - -
Cca01g00154 542 SUPERFAMILY Ricin B-like lectins 407 529 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00154 Cca-Chr1 1510511 1516881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00154 17 537 Glycoside Hydrolase AT3G26130 55.159 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00154 - - gmx:100805196 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00154 01 1510511 1516881 Cca01g00154 01 1510511 1516881 ECH