Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00149 ATGGGTCTcgacggcgcggcggcggcggaggcgCTTCTGGCGTCAGGACGGAGTTCCGAGAAGCTGAGCCTTCCATTGCTCCAATCAAAGATGAAGTGCGATCCAGAAGGCTACGAATCGGAGCTTCTCCTTCTCTACAACCAATTCAATTCCTCGCTCGACCTATTTCAGAAACAAGCCGACATGAACTTCGCCTCCGTCAGCGGCATTGGCAGCGATCCCACCGTCTCCAAGGATCTCGGCGACAGAGCCACGTTTCTCTCCCACGTCACTCCTTTTTACCCCAAACACCTCGCCGATTTCCCGCGCAAACTCGCCGATTTGCTTCGCGGAGCCGCGCGCACGCTGCCTTCGGGCCTGCGCTGCAACCTTACTCAAGCTCTCATACTCCTCGCCAATCGGAAGATTGTTGATATTGGAGAAACACTGGCGTTGTTCATGGAGCTTCAAACCCTAGGTGACAGGACATTGAAGAAGTTAGCGTTTGATCATGTGGTTCACAGTATAAGACGCATGAACCAAAAGCATAAGAACGAAGCCAAGAACAGAGTGCTTCAGAATATCTTGTTTGACATTCTTCTGAAAGACGATGAAGAGCCAGCCAAGAGGGCACTCGTTACCCTATGTGAGCTTCACAGGAGAAAAGTGTGGTTTGACGAGAGAACAGCAAATGCAATTTGCACTGCTTCCTTCCATCAATCATCGAGGATTATGATAGCAGCTTTATCATTTTTGCTtgattatgagaagattcaagatgatgatgatagtgatgattcaggcagtgatgatgaAAGGACTGAATCACCTCAAGTTGTTCTTAGCAGGGAGACAGTTTATAAGGCAAGCCACCAAGGTACATCAGCGAGCAAAAAGAAAAAGAAAGCAAAACTAGAACGTGCCATACGCAGCATGAAAAGGAAGCAGCGCCTGTCGACTGAAAAGACAAATAACAGTTATTATTCACCACTTAACCACCTGAAAGATGCTCAGGGTTTTGCTGAGAAGCTGTTTGCACGTCTTAAGAATTGTAATGAACGATTTGAGGTTAAGATGATGATCTTGAAATTGATTGCTCGAACTGTTGGACTTCACCATTTAATTTTGCTAGAATTCTATTCTTTTCTTCAGAAATATATTCAGCCACATCAGCGTGACATTACAAATTTGCTTGCAGCAGCGGTTCCTCCCGATGCAGTTGAGCCCTTGTTCAAACAAATAGTAAATCAATTTGTGCATGACCGTTCACGACCAGAGGCAATTACGGTTGGAATAAATGCAGTCAGGGAGATATGCATGCGCATGCCGTTGTTAATGAATGAAGACTTACTACAAGACCTTGCGCTATATAAGAAGTCACGTGAGAAGGCAGTTTCAGTAGCAGCTCGATCTCTGATTGGGTTATTCAGAGAGGTGGTGTGCCCCTCACTCCTAGTTAAGAAAGACCGTGGCCGGCCTATTGACCCTAAGGCAAAACCAAAAGCCTTTGGGGAGGTCAATGTTGCATCTGATGTTCCTGGCGCTGAGTTATTGCATATTGTTGACAATGATGATGAACAAGACATGGGTCAATCTGATGATTCTGCATATAGCGTCTCtgacaatgaccaggaaaatgatctgatgagtataaatgatgatgacagtgataatgagaaCCAGTTATGCAGtgatgatactggaagtgatgacgaagctgaagataatgatgttatatcaggagatgaagatgaaaatgagggaagttcagacgaaattggtgttagtgatgatgatgatgacaacgatgacattgaaaatagtgaacaagctgatgaagaagatgatgtttcagaacatgaagatgatgatgggaatgtgaAGCTAAAAAATACATTGGAAGACTCGGGGAAAAAGAGGAAGTTTACTGATTTTAATGGTCAACTTATAGCTGCGGATACAAGTCTCCGAGCTTTGAAGAAATTGGCAGGTACAAAAATGGGGGATGTCCTACCAGAACCTGAAGATGGAATTCTTTCTAATGAAGATTTCCAGAGGATCAAAGAACTAAAGGCAAAAAGAGAGGCAAAAAATGCATTGGCTCAGCAAGGGCTAGGGAAGTCAGCAACAATTAAGGTTCCAAGCTCTGATCAACTAAGTCTTAAGCGAGTGGATGGTGCCATGCTTGAAGCTCATATAAGGAAAAAGTTGAACAAGGATGAGAGGTTGGCATTGGTTAGAGCAGGGAGGGAGGAAAGAGGAAAATATTATGCTCGAACTGCTGTAAAACAGAAAAAGACGGGTGGCCTAAGCAACCGACAAAAGGAACACAAGAAGAAAATGCCGTTGGCTGCAAAGAGAGATAAGGTAGCGAGAACTCGGATTGAGAAAAAGAGGAAAAATTCGCGATCTGGCAAACAGTTCCGGGGGAGGAAAGCGTGGAAGCAGTAA 2430 0.3897 MGLDGAAAAEALLASGRSSEKLSLPLLQSKMKCDPEGYESELLLLYNQFNSSLDLFQKQADMNFASVSGIGSDPTVSKDLGDRATFLSHVTPFYPKHLADFPRKLADLLRGAARTLPSGLRCNLTQALILLANRKIVDIGETLALFMELQTLGDRTLKKLAFDHVVHSIRRMNQKHKNEAKNRVLQNILFDILLKDDEEPAKRALVTLCELHRRKVWFDERTANAICTASFHQSSRIMIAALSFLLDYEKIQDDDDSDDSGSDDERTESPQVVLSRETVYKASHQGTSASKKKKKAKLERAIRSMKRKQRLSTEKTNNSYYSPLNHLKDAQGFAEKLFARLKNCNERFEVKMMILKLIARTVGLHHLILLEFYSFLQKYIQPHQRDITNLLAAAVPPDAVEPLFKQIVNQFVHDRSRPEAITVGINAVREICMRMPLLMNEDLLQDLALYKKSREKAVSVAARSLIGLFREVVCPSLLVKKDRGRPIDPKAKPKAFGEVNVASDVPGAELLHIVDNDDEQDMGQSDDSAYSVSDNDQENDLMSINDDDSDNENQLCSDDTGSDDEAEDNDVISGDEDENEGSSDEIGVSDDDDDNDDIENSEQADEEDDVSEHEDDDGNVKLKNTLEDSGKKRKFTDFNGQLIAADTSLRALKKLAGTKMGDVLPEPEDGILSNEDFQRIKELKAKREAKNALAQQGLGKSATIKVPSSDQLSLKRVDGAMLEAHIRKKLNKDERLALVRAGREERGKYYARTAVKQKKTGGLSNRQKEHKKKMPLAAKRDKVARTRIEKKRKNSRSGKQFRGRKAWKQ 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00149 809 MobiDBLite consensus disorder prediction 785 809 - -
Cca01g00149 809 Pfam SDA1 439 805 IPR007949 -
Cca01g00149 809 MobiDBLite consensus disorder prediction 756 809 - -
Cca01g00149 809 MobiDBLite consensus disorder prediction 762 784 - -
Cca01g00149 809 MobiDBLite consensus disorder prediction 540 614 - -
Cca01g00149 809 Coils Coil 288 311 - -
Cca01g00149 809 MobiDBLite consensus disorder prediction 517 634 - -
Cca01g00149 809 Pfam NUC130/3NT domain 86 137 IPR012977 -
Cca01g00149 809 MobiDBLite consensus disorder prediction 525 539 - -
Cca01g00149 809 PANTHER HSDA/SDA1-RELATED 19 808 IPR027312 GO:0000055|GO:0042273
Cca01g00149 809 PANTHER PROTEIN SDA1 HOMOLOG 19 808 - -
Cca01g00149 809 SUPERFAMILY ARM repeat 85 559 IPR016024 -
Cca01g00149 809 MobiDBLite consensus disorder prediction 615 634 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00149 K14856 - gmx:100816774 1284.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00149 01 1459174 1464667 Cca01g00149 01 1459174 1464667 ECH