Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00148 ATGAATCCTCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGGCCGAACTCGGTCGTGGCGAAATCGCCGAGTCAGTGTCAGTTAGGGCTCGATGCGTCCGTCAGGACGGTGAACTGCGCCTCGAAGGCGAGTTTCTCCACGCAGGAGTCGTCGGTCGGCGCGGATTCCGCCGCGGCGGCGGCGAATCTGGAGGAGGAGGAGGAGGCGCGCGATTCGAAGGTGTTCGGCGGCGGGAACGGCGGCGGAGTGGCCGGGAGCGTGGCCGGGATACTGTACAAGTGGGTGAACTACGGGAAGGGGTGGAGGTCGAGGTGGTTCGTGCTGGAAGATGGCGTGCTTTCGTATTACAAGATTCACGGACCGGACAAGATCTTGATGAGTCCGGCGAGGGATAGGAGCGTGAGGGTGATCGGAGAGGAGTCGTCGAAGTACGTGAAGAAGGCGAATTGGAATCTGAATCTGAATCTGAATCGAGCACCTTCCGGAGGAGTTGGGGGTAACAGTAACAGTAACAACGGCAAGCAATGCAAGCCCTTCGGTGAGATACATTTGAAGGTTTCATCTGTTCGTTCCAGCAAGTCTGATGACAAGCGGCTTTCCATATTTACTGGGACAAAAACTCTTCACTTGCGGTGTGTATCTAGAGAAGACAGAGCCATGTGGATTGAGGCCTTGCAGTCTGCAAAAGATCTTTTTCCTAGAGCTCTGACAAGTAGCGATCTTGCAACTTCAGAAGATATTGTGGTTTCAACAGAGAAGCTGCGATCACGATTGTCACAGGAAGGCATAAGTGAAGCAATCATTAATGATTGTGAGTCTATTATGCTTTCTGAAGTCTCTTATCTTCAAAGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTAGAGACAGAGAAAATAGAGTTGGAAACTACTGTTGTGGATGAAACAAAGGAACGTGAATCATATTGTGGACAAGGAAATAGAAGGTTTAGTGATTTCTATTCTGTCATGTCGGAGGGCAGTGCTACTGATTCAGTGGCCGATAATGAAAGTCAAGATGGAGCAGATGTTGAAACAGATGATGATGATAGAACATATTTTGACACAAATGAGTTTTTGTATTCTGATGCCCTAAGAAGTGCTTCCTATCGAGGTAGAGAAGGTATGGGCAATGCTAGTATATATGATAGAGATTATATTTGTTATGATGGTGTGCATGGGTTTGAGAAGGAGATCAAAGATGTAAGTTATCCATATGTCAAAAGAAGGGATAACTTACCAGAGCCAAAAGAAAAAGAGAAGCCTGTTGGCTTGTGGTCGATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTATCTTCATTGCAAAAGTGTTTTGAAGACCTAGAGTATTCATACCTTGTTGATAGAGCATTGGAGTGGGGAAAGCAGGGGAATGATTTGATGAGAATTCTAAATATTGCAGCTTTTGCTGTGTCTAGCTATGCATCAACTGAAGGTCGACAATGTAAACCTTTTAATCCTTTACTTGGGGAGACTTATGAAGCTGACTATCCAGATAAAGGACTTAGGTTTTTTTCTGAAAAGGTTAGTCATCATCCAATGATTGTTGCTTGTCACTGTGAAGGAAAGGGATGGAAGTTTTGGGCAGATTCTAATTTGAAAGGAAAATTCTGGGGGCGATCAATCCAGTTAGATCCTGTGGGTGTCCTCACTCTTCAGTTTGATGATGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATCATACTAGGTAAAATTTATTGTGACCACTATGGTACCATGCACGTCAAGGGCAGCGGCGATTATTCTTGCAAACTAAAATTCAAGGAGCAATCTATTATAGACAGAAACCCACATCAGGTTCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTACTATGTACTTGGGGATCCAACCACCAAGCCAAAAGGTTATGATCCGATGACAGAAGCTGCATTATTGTGGGAAAGGGACAACCATGTATCCAAGACAAGATACAACCTCTCTCCTTTTGCAATTTCCTTGAATGAAATATTACCTGGTCTATTAGAGAAGTTGCCTCCAACTGACTCGAGGTTGAGACCAGATCAAAGACATCTAGAGAATGGAGAGTATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCAAGAAAAATGCAAGAAAGAGGATGGCAACCGAGATGGTTTAAGAAGGATGAGGATGGTTGTTATCGATATACTGGTGGCTATTGGGAAACAAGAGAAAAGAATAATTGGGATGGAATCCCGGATATATTTGGACAGAGTTGCGATTTACCTTCATGTTCGGAAGAGACTGTATCCTACTGA 2469 0.4435 MNPLCCIAPVSIDRDRPNSVVAKSPSQCQLGLDASVRTVNCASKASFSTQESSVGADSAAAAANLEEEEEARDSKVFGGGNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDRSVRVIGEESSKYVKKANWNLNLNLNRAPSGGVGGNSNSNNGKQCKPFGEIHLKVSSVRSSKSDDKRLSIFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRALTSSDLATSEDIVVSTEKLRSRLSQEGISEAIINDCESIMLSEVSYLQSKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQDGADVETDDDDRTYFDTNEFLYSDALRSASYRGREGMGNASIYDRDYICYDGVHGFEKEIKDVSYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGKGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFDDGETFQWSKVTTSIYNIILGKIYCDHYGTMHVKGSGDYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERDNHVSKTRYNLSPFAISLNEILPGLLEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWQPRWFKKDEDGCYRYTGGYWETREKNNWDGIPDIFGQSCDLPSCSEETVSY 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00148 822 Gene3D - 86 234 IPR011993 -
Cca01g00148 822 Coils Coil 749 769 - -
Cca01g00148 822 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 811 - -
Cca01g00148 822 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 811 IPR000648 GO:0008289
Cca01g00148 822 SMART PH_update 87 234 IPR001849 -
Cca01g00148 822 Pfam Oxysterol-binding protein 442 795 IPR000648 GO:0008289
Cca01g00148 822 Coils Coil 288 322 - -
Cca01g00148 822 MobiDBLite consensus disorder prediction 345 365 - -
Cca01g00148 822 ProSiteProfiles PH domain profile. 86 232 IPR001849 -
Cca01g00148 822 Pfam Pleckstrin homology domain 91 229 - -
Cca01g00148 822 Gene3D - 527 694 - -
Cca01g00148 822 SUPERFAMILY Oxysterol-binding protein-like 436 808 IPR037239 -
Cca01g00148 822 SUPERFAMILY PH domain-like 89 232 - -
Cca01g00148 822 Gene3D - 738 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00148 Cca-Chr1 1451758 1458317 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00148 K20456 - gmx:100788779 1561.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00148 01 1451758 1458317 Cca01g00148 01 1451758 1458317 ECH