Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00147 ATGGCGTTGGCTTTCGACGAGTTCGGAAGGCCTTTCATAATCCTGAAGGAGCAGGAACAGAAGAGTAGACTCAGAGGCTTAGACGCTCAGAAATCAAACATCTCCGCCGGCAAAGCCGTCGCTCGCATCCTCCGAACCTCCCTCGGCCCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGCGACGTCACAATAACGAACGATGGCGCCACGATTCTCGAGCAGATGGACGTGGACAACCAAATCGCGAAGCTGATGGTGGAGCTTTCGAGGAGTCAGGACTACGAAATCGGCGACGGCACCACCGGCGTCGTCGTCCTCGCCGGCGCGCTTCTCGAGAAGGCGGAGCGCCTCCTCGAGCGCGGAATTCACCCCATCAGGATCGCCGAGGGTTACGAAATGGCGTCGAGGATCGCCGTCGAACACCTCGAGCGCGTCGCCAACAAGTTCGAGTTTGATGACACCAATTTGGAGCCTCTCATTCAAACTTGCATGACCACCCTCTCCTCAAAGATTGTGAATCGGTGCAAGCGTAGCTTGGCTGAGATCGCTGTGAAGGCGGTTCTCGCTGTTGCTGATCTGGAGAGGAAGGATGTTAATTTGGATCTGATTAAAGTGGAAGGGAAAGTTGGTGGGAAGTTGGAGGATACTGAGTTGATTTATGGCATTGTTGTTGATAAGGATATGAGTCATCCCCAGATGCCTAAGCAGATTGAGGATGCTAAAATTGCTATCCTCACTTGCCCCTTTGAGCCTCCCAAGCCAAAGACTAAGCATAAGGTTGATATCGATACGGTGGAGAAGTTTCAGACGTTGAGGTTGCAGGAACAGAAGTATTTTGATGACATGGTTCAAAAGTGCAAGGATGTGGGTGCAACGCTGGTCATTTGCCAATGGGGTTTTGACGACGAAGCAAATCATCTCCTAATGCACAGGAACTTGCCAGCCGTCAGATGGGTTGGTGGTGTAGAGTTGGAATTGATAGCTATAGCAACAGGTGGAAGAATTGTGCCTAGGTTCCAAGAGTTATCTACAGAAAAGTTGGGAAAGGCTGGTATGGTTCGAGAAAAGTCATTTGGTACAACAAAAGACCGAATGCTATACATTGAACATTGTGCAAACTCAAGGGCTGTAACAATATTCATTCGAGGAGGTAACAAAATGATCATAGAGGAGACAAAGCGCAGCCTTCACGATGCATTGTGTGTGGCTAGGAATCTTATTCGCAATAAGTCTATTGTATATGGTGGTGGTTCAGCTGAGATTGCCTGCTCTATAGCTGTGGAGGCAGCTGCTGATAGATACCCTGGAGTAGAACAGTATGCTATTAGAGCATTTGGGGATGCTTTGGAGGCCATCCCAATGGCCCTTGCTGAAAATAGTGGCCTCCAACCGATTGAAACATTATCCGCTGTCAAGGCTCAGCAAATAAAGGATAATAACCCTCACTTTGGCATTGATTGTAATGATGTTGGCACTAATGACATGCGTGAGCAAAATGTCTTTGAAACTTTGATTGGAAAGCAGCAACAGCTCTTGCTCGCTACTCAAGTTGTCAAGATGATTCTGAAAATTGATGATGTCATTTCCCCATCTGAGTACTGA 1608 0.4845 MALAFDEFGRPFIILKEQEQKSRLRGLDAQKSNISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVLAGALLEKAERLLERGIHPIRIAEGYEMASRIAVEHLERVANKFEFDDTNLEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGMVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNKSIVYGGGSAEIACSIAVEAAADRYPGVEQYAIRAFGDALEAIPMALAENSGLQPIETLSAVKAQQIKDNNPHFGIDCNDVGTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVISPSEY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00147 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
Cca01g00147 535 PANTHER CHAPERONIN 5 532 IPR017998 GO:0140662
Cca01g00147 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Cca01g00147 535 SUPERFAMILY GroEL-intermediate domain like 156 411 IPR027410 -
Cca01g00147 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cca01g00147 535 PANTHER BNAA08G19100D PROTEIN 5 532 - -
Cca01g00147 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Cca01g00147 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Cca01g00147 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Cca01g00147 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Cca01g00147 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Cca01g00147 535 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Cca01g00147 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cca01g00147 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Cca01g00147 535 Gene3D GroEL 222 376 IPR027409 -
Cca01g00147 535 Gene3D - 37 530 IPR027413 -
Cca01g00147 535 Gene3D - 150 412 IPR027410 -
Cca01g00147 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Cca01g00147 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00147 Cca-Chr1 1432675 1437311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00147 178 432 EF-hand Containing Proteins AT3G14270 22.993 1.32e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00147 K09497 - gmx:100817323 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00147 01 1432675 1437311 Cca01g00147 01 1432675 1437311 ECH