Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00142 ATGGATGCCACAACCAGCGGAACCCCTACTATCCAATACCATAACATCCCTGATCAGCCAATTACTGCCATTATTGCCTCTCCACTTCCAACATTTCAAAGGCAGCAACGCCATTGCTTTGGGGACTCCACTCCTGGAGAGTTTCCCTTGTCTGCTAATCCTTCCATTGTCCTTCATGTCCTCACAACATGCAATTTGGACCCTCAAGACCTTGCTAAACTAGAGGCAACATGTTCCTTCTTCAGGCAGCCTGCAAACTTTGCTCCGGATTTGGACTTGTCCTTATCCGAGCTTGCTGCACTAGACATGTGCCAGAAGAGAGCCATCTTCAAGCCAATGACAACAGAACAACGCCAAGATTTGAAGCGAAGGTGTGGAGGTTCTTGGAAGCTGGTGCTGAGGTATTTGATGGCTGGAGAGGCATGTTGCAGGAGGGAGAAGTCTCAGGCTATAGCAGGTCCTGGTCACAGCATTGCTGTGACATCTAAAGGGATTGTTTATTCATTTGGATCCAATAGTTCAGGACAACTTGGACATGGTACCACTGAAGAGGAATCACGACCTCGACCAATAAGAACCTTGCAAGGAATTCGAATTATACAAGCTACAGCAGGGGCTGGCAGGACAATGTTGGTTAGTGATTCAGGAAAGGTGTATGCATTTGGAAAAGACTCATTTGGGGAAGCTGAGTATGGAGTTCAAGGTTCTAAAACGGTTACATCTCCGCAGTTAGTGGAGTCTCTTAAAAACATATTTGTTGTTCAAGCTGCAATTGGTAATTTCTTCACAGCTGTATTATCGAGAGAAGGCAGGGTTTATACATTTTCGTGGGGTAGTGATGGCAAACTTGGTCACCACACTGATCAAAGTGATGTGGAACCTCGCCCTTTATTAGGTGCTCTTGAAGACATACCTGTAGTGCAAATTGCTGCTGGATATTGCTACTTGCTTTGTTTGGCTTGTCAACCAAGCGGAATGTCAGTATATTCTGTTGGGTGTGGCTTGGGGGGCAAGCTTGGACATGGATCAAGAACGGATGAAAAGTACCCTAGATTGATTGAACAGTTTGGGTTGCTGAACCTCCAACCCATGGTTGTTGCAGCAGGTGCTTGGCATGCTGCTGTGGTGGGGCGGGATGGTCGTGTTTGCACATGGGGATGGGGTCGATATGGTTGCTTGGGGCATGGGAATGATGAGTGTGAATCAGCACCTAAGGTGGTGGAAGCATTGAACAATGTCAAAGCTGTTCATGTTGCCACAGGAGATTATACAACCTTTGTAGTGTCTAATGATGGTGATGTGTATTCATTTGGGTGTGGAGAATCTGCTAGTCTTGGACACAATGCTGTTGGAAATGATGAACAGGGTAACAGACATGCAAATGTGTTAAGTCCGGAACTTGTTACCTCACTGAAACAGATCAATGAACGGGTGGTGCAGATTAGTCTGACAAATTCTATATATTGGAATGCTCATACCTTTGCCCTCACTGAATCAGGGAAGCTGTATGCATTTGGAGCCGGAGATAAAGGACAACTGGGAATTGAGCTTGTTGCTAACCAAACTGAAAGGGGAAATCCAGAAAGGGTTGAAATTGATCTCGGTTAA 1608 0.4577 MDATTSGTPTIQYHNIPDQPITAIIASPLPTFQRQQRHCFGDSTPGEFPLSANPSIVLHVLTTCNLDPQDLAKLEATCSFFRQPANFAPDLDLSLSELAALDMCQKRAIFKPMTTEQRQDLKRRCGGSWKLVLRYLMAGEACCRREKSQAIAGPGHSIAVTSKGIVYSFGSNSSGQLGHGTTEEESRPRPIRTLQGIRIIQATAGAGRTMLVSDSGKVYAFGKDSFGEAEYGVQGSKTVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDQSDVEPRPLLGALEDIPVVQIAAGYCYLLCLACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFGLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNDECESAPKVVEALNNVKAVHVATGDYTTFVVSNDGDVYSFGCGESASLGHNAVGNDEQGNRHANVLSPELVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVANQTERGNPERVEIDLG 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 499 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 164 211 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 215 266 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 431 482 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 379 428 IPR000408 -
Cca01g00142 535 Pfam Regulator of chromosome condensation (RCC1) repeat 269 314 IPR000408 -
Cca01g00142 535 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 534 - -
Cca01g00142 535 SUPERFAMILY RCC1/BLIP-II 148 448 IPR009091 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 535 IPR000408 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 216 269 IPR000408 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 379 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 147 160 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 166 182 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 216 232 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 256 272 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 272 286 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 369 387 IPR000408 -
Cca01g00142 535 PRINTS Chromosome condensation regulator RCC1 signature 427 448 IPR000408 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 215 IPR000408 -
Cca01g00142 535 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 322 IPR000408 -
Cca01g00142 535 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 534 - -
Cca01g00142 535 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 366 376 IPR000408 -
Cca01g00142 535 Gene3D - 322 534 IPR009091 -
Cca01g00142 535 Gene3D - 145 321 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00142 Cca-Chr1 1392673 1396713 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00142 - - gmx:100779690 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00142 01 1392673 1396713 Cca01g00142 01 1392673 1396713 ECH