Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00134 ATGGCTTCGTATGATGAACAACAAGGAAAGCCTTTACCCAAGTTTGGGGAATGGGATGTAAATGATCCTGCCTCAGCTGAAGGATTCACTGTTATATTCAACAAGGCCAGAGATGAGAAAAAAATTGCTTCAGCATCTGGAAGATTCCCTTCTCAGCGTAGACATGATTCTCGCAATCGTAAGGGTCAACAAAAATGCAAGAGTAGTGCCTCAAAGAAGAAATGGCTTTGCTTTGGCCCTTAG 243 0.428 MASYDEQQGKPLPKFGEWDVNDPASAEGFTVIFNKARDEKKIASASGRFPSQRRHDSRNRKGQQKCKSSASKKKWLCFGP 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00134 80 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 65 IPR040387 -
Cca01g00134 80 MobiDBLite consensus disorder prediction 42 72 - -
Cca01g00134 80 PANTHER PROTEIN NOI4 6 65 - -
Cca01g00134 80 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 7 41 IPR008700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00134 Cca-Chr1 1321489 1323185 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00134 - - gmx:102669045 143.28