Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00127 ATGGCACACGCTTTATCCTCCAATGTGGCTCTTAACGTTCCCACATTGAGGTACCTTGGTCCAAAGCAGTTGAAACCCGTGAGGGTGATGATGGGAGATGCAAGAGAAAAAGTTGAGCATGTTCCAAGACACCACCACAACCACCATCCCCTCCCCAAAAAGAAACTTCCCCCTACCGCACCCATAGGGTTGTGGGACAAGTTTCCTACGGCTAGGACAGTGCAAGAGATGATGGAGACAATGGAAAGAATGATGGAGGACCCTTTTGCCTTGAGCACACTTGAGTGGCCTTCTTCTCCACTTCCAAGTGAGGGAGTTGGTGGGTACAAAAGAAGGGGAAGAGCACCATGGGAGATCAAAGAGGGAGAGAGTGAGTACAAGATGAGGTTTGACATGCCAGGGATGAACAAGGAGGATGTGAAGGTGTGGGTGGAGGAGAAGATGCTTGTGGTCAAGGCTGAGAAAGAACCAAAGAAGAAGCATGAGAATAATGGGATTGTGGAACATGAGGAGGAAGATTGGTCTGCTAAGAGTTATGGTAGGTATAGCAGTAGGATTGCTTTGCCTCATAATGTTCAGTTTGAGAATATTAAGGCTGAAGTTAAGGATGGTGTGCTCTATATAACTATACCTAAGGCTAGTAGCTACTCAAACATCTTGGATATTCAAGTTCAATGA 678 0.4631 MAHALSSNVALNVPTLRYLGPKQLKPVRVMMGDAREKVEHVPRHHHNHHPLPKKKLPPTAPIGLWDKFPTARTVQEMMETMERMMEDPFALSTLEWPSSPLPSEGVGGYKRRGRAPWEIKEGESEYKMRFDMPGMNKEDVKVWVEEKMLVVKAEKEPKKKHENNGIVEHEEEDWSAKSYGRYSSRIALPHNVQFENIKAEVKDGVLYITIPKASSYSNILDIQVQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00127 225 Pfam Hsp20/alpha crystallin family 118 224 IPR002068 -
Cca01g00127 225 Gene3D - 64 224 IPR008978 -
Cca01g00127 225 CDD ACD_sHsps-like 118 212 - -
Cca01g00127 225 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 108 225 IPR002068 -
Cca01g00127 225 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 225 - -
Cca01g00127 225 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 225 IPR044587 GO:0009408
Cca01g00127 225 SUPERFAMILY HSP20-like chaperones 105 214 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00127 Cca-Chr1 1266609 1267786 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00127 K13993 - gmx:100811966 348.591