Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00125 ATGTTCAAACAGATATTTAGTAAACTCCCTCGAAAATCATCGAAAGGTTCTGAACATGGTGGTAGTGGAAGAAACCATCACGGTGTTACAACTTCTAGGGGTAGTGATTCTGTTAGTGTTACCTCAGGTGGCACCAAACCCGGGAATTCTTCTTCCGCGGGGCATAATCATGGTCACAGAGTTCCATTACCGGTGGTTGTGAATGAGAACAACAACCCCAGCAATGGGAATTTTGGTTCCTATGAAGCATTGCCTGCTTTCAGGGATGTTCCCTCTTCTGAGAAGCCAACCTTGTTCATCAAGAAGCTTAGGATGTGTTGTGTGGTGTTTGACTTCACTGACCCCACCAAGCACCTCAAGGAGAAGGAGATTAAAAGACAGACCTTGGTGGAACTTGTGGATTATGTGACCTCTGCGAATGCCAAGTTCGCAGAGAATTTGATGCAGGAGGTTGTGAAAATGGTTTCTGCCAACATATTCAGAACGCTTAGTCCTCAGCCGCGCGAGAACAAGATTGTCGATGGCGTTGATGTGGAGGAAGAGGAGCCTTCGATGGACCCTGCTTGGCCTCATTTGCAGATTGTGTATGAGCTTTTTCTGAGGTTCGTGGCATCGCCGGAGCTGGATGCTAAGTTGGCCAAGAGATACATTGATCAGTCCTTCATTTTGAAGCTGCTGGATTTGTTTGACTCCGAGGATCCCAGAGAGAGGGAGTACTTGAAGATGACGCTGCATCGCATATATGGCAAATTCATGGCGCATCGCCCTTTCATTAGGAAAGCCATCAACAATGTGTTTTTTAATTTCATTTTTGAGACTGAGAAGCACAATGGGATTGCTGAGTTCTTGGAAATTCTTGGGAGCATCATCAATGGTTTTGCACTGCCGCTGAAGGAAGAACATAAACTGTTTCTTGTTCGCATACTGATTCCGCTGCACAAGCCAAAGTGCTTGGCAATGTATCATCAGCAGTTGTCTTACTGCATTACCCAATTTGTGGAGAAAGACTGCAAGCTTGCTGATACAATCATTAGGGGATTGTTGAAGTACTGGCCAATAACAAATAGTTCAAAGGAAGTTATGTTCCTGGGTGAATTGGAAGAAGTCTTGGAAGCAACTCAACCCCCAGAATTCCAGCGTTGTATGGTGCCATTGTTTCGTCGCATTGCCCGTTGTTTGAGCAGCCCTCATTTTCAGGTGGCAGAAAGAGCCTTGTTCTTGTGGAACAATGATCACATCATGAACTTAATCAAACAAAACCGAAAAGTGATACTGCCCATCATCTTCCCTGCATTGGAGAGAAATGCTAGAAGTCATTGGAACCAAGCTGTGCATAGTTTGACTTTAAATGTGAGGAAGATTTTTAATGATGTTGACGCCGATCTATCTAAAGAATGCTTACAAAAGTTTGAGGAAGACGAGTCAAAGCAAAGTGAAGTGTTAGCAGGGCGTGAAGCCACATGGAATCGCTTAGAGGAACTTGCTACAAAGAAAGCTGCAAGTGGCGAAGCAGTGCTTATTGGTAAAGCACAAACTCGCAACTCTGCAGGTTAG 1554 0.4466 MFKQIFSKLPRKSSKGSEHGGSGRNHHGVTTSRGSDSVSVTSGGTKPGNSSSAGHNHGHRVPLPVVVNENNNPSNGNFGSYEALPAFRDVPSSEKPTLFIKKLRMCCVVFDFTDPTKHLKEKEIKRQTLVELVDYVTSANAKFAENLMQEVVKMVSANIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLSSPHFQVAERALFLWNNDHIMNLIKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEEDESKQSEVLAGREATWNRLEELATKKAASGEAVLIGKAQTRNSAG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00125 517 MobiDBLite consensus disorder prediction 24 56 - -
Cca01g00125 517 Gene3D - 91 494 IPR011989 -
Cca01g00125 517 MobiDBLite consensus disorder prediction 1 74 - -
Cca01g00125 517 SUPERFAMILY ARM repeat 97 477 IPR016024 -
Cca01g00125 517 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 84 495 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca01g00125 517 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 516 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca01g00125 517 PIRSF PP2A_B56 4 516 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cca01g00125 517 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00125 Cca-Chr1 1250180 1255410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00125 K11584 - gmx:100811438 944.495