Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00118 ATGACGGAAAGCGAAGAAGGGAAGTGTGAGAAAATGGGCAAAGTGAAGAAACGTGGAAGCGTGCTCGTCTTCACCGGAGCCGCTGCGGTAGTTGCGATTACGGCGAACCTAGCCATCACCGCTTTCAAGTACCGGAAGGAAAAAAATGCAAAGAAGAAAGATCTTGCAGGTTCTAAGGTGCGCGTTAACCTATCTGCATCTGAGATTCTTAAGTTAGCAGACCAAATCATTGCCAACTCAAACAAGGTTCATAACTCTATTGCGTCGGTGCCTCTCGACAAGGTTACATATGCAAATGTTATATCGCCTCTGGCTGAATTGCAAGCGCAGCAATTCCCACTGATCCAGTCATGTGTGTTTCCGAAGCTGGTATCTACTCGGGAGGATGTACGCAAAGCAAGCGCGGAAGCAGAGCAAAGAATAGATGCTCATCTTGATGCGTGCAGCAAACGTGAAGATGTATATCTTGTAATTAAAGCATTTGCAGTTAGGGGGGAGTGGATGAATGCTGAAGCCAAACACTTTGTTCAAATTCTGGTGCGAGACTTTGAGCGAAATGGATTGAACCTCACTGCAAGCAAAAGAGAAGAGTTGCAGCGTATAAGGGCTCAGATTGATGAATTAAGCTTTAAATATATCCAAAATCTCAATGATGATAGCAAGTTTCTTCTCTTCAATGAGGCAGAGCTAGCTGGATTACCTCCAGATTTTCTCAAGGGTTTAGATAAATCAGAAAATGGAAAATTGAAAATTTTCCTGCGAAGTCATCATGTTGCAGCTGTACTTGAATTTTGCAAGGTTGGAACTACAAGGCGGAGTGTATCAGGGGCATATGGGAATCGGTGCGGAGAAATCAATGTTTCTATTTTAGAAAGCCTGGTGCAACAGCGCCATAAGTATGCTCGTTTACTTGGCTATTCATGCTATGCAGAGTATGCCATTGGTGTTAGAATGGCAAAGACACCAAAAAAGGTGTTTGAGTTCCTGAAGGACATGTCAACAAGTTTAACTGACTTGGCCGTGAAAGAACTTGATGTCCTGAAAGATTTGAAGAAGAAAGAGGAAGGGGAGTTTCCATTTGGAATTGAGGACCTACCGTATTACGTAAAACGGGTTGAAGAACAGGGTTACGATTTGGACTTTGGAGATATCAAGCAATATTTGCCAATTAGTGTGGTTCTGTCAGGGATCTTCAAAATTATCCAAGATCTATTTGGCTTAAGGTTTGAGGAAATTGCAGGAGCTGATGTTTGGCACTGTGATGTGCGTGTTTTTTCAGTGTTCGACTTAGGTTCTAGTGAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCAAGGGAAGGAAAATATGGTCATACTTGTGTGTTGGCTCTCCAGAACAGTGCATTAACGATCAGTGGGGCACGACAGATACCAGTTGGATTGCTAATATCTCAGTGTCAGAAGGATGCTGATGGTAGTTCTGGATTATTGCGGTTTTCTGAAGTAGTCAGTCTTTTCCATGAGTTTGGTCACGTGGTTCAACAAATTTGCAACCGTGCATCATTTTCTAGAATTTCTGGATTATGTGTTGATCCTGACTTTGTAGAAATACCTGCTCAACTGCTAGAAAACTGGTGTTATGAAAGCTATTCTCTGAAGTTGATTTCAGGATTTCATCAGGATATTACAAAACCTATAAAGGATGACATATGCAAATCAATTAAAAGATGGAGGAGTTCTTTTTCCGCACTCAAATTGAAGCAAGAGATTCTATGCTGTCTTTTTGACCAAATCATACATTCTGCGGATAACATAGACACGCAGGAATTATTCGAGCATCTTCATCACATGGAGATGTTAGGCTTGCCGATATTAGAAGGAACCAATCCAGCGTCATATTTTCCTTCTGTTGTCATTGGTTATGAGGCAGTATGCTACAGTCGTATATGGAGCGAGGTTTTTGCTGCCGATATATTCACCTCAAAGTTCTGCAACGATGTTTCAAACCAGCATGCTGGCATGCAATTCAGGAGCAAGGTATTGACACCGTCAGACGAAGTGTGA 2046 0.4198 MTESEEGKCEKMGKVKKRGSVLVFTGAAAVVAITANLAITAFKYRKEKNAKKKDLAGSKVRVNLSASEILKLADQIIANSNKVHNSIASVPLDKVTYANVISPLAELQAQQFPLIQSCVFPKLVSTREDVRKASAEAEQRIDAHLDACSKREDVYLVIKAFAVRGEWMNAEAKHFVQILVRDFERNGLNLTASKREELQRIRAQIDELSFKYIQNLNDDSKFLLFNEAELAGLPPDFLKGLDKSENGKLKIFLRSHHVAAVLEFCKVGTTRRSVSGAYGNRCGEINVSILESLVQQRHKYARLLGYSCYAEYAIGVRMAKTPKKVFEFLKDMSTSLTDLAVKELDVLKDLKKKEEGEFPFGIEDLPYYVKRVEEQGYDLDFGDIKQYLPISVVLSGIFKIIQDLFGLRFEEIAGADVWHCDVRVFSVFDLGSSELLGYCYLDLFSREGKYGHTCVLALQNSALTISGARQIPVGLLISQCQKDADGSSGLLRFSEVVSLFHEFGHVVQQICNRASFSRISGLCVDPDFVEIPAQLLENWCYESYSLKLISGFHQDITKPIKDDICKSIKRWRSSFSALKLKQEILCCLFDQIIHSADNIDTQELFEHLHHMEMLGLPILEGTNPASYFPSVVIGYEAVCYSRIWSEVFAADIFTSKFCNDVSNQHAGMQFRSKVLTPSDEV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00118 681 Gene3D Neurolysin, domain 3 195 678 IPR024077 -
Cca01g00118 681 Gene3D Endopeptidase. Chain P; domain 1 40 185 IPR024080 -
Cca01g00118 681 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 63 675 - -
Cca01g00118 681 CDD M3A_TOP 70 677 - -
Cca01g00118 681 Gene3D Collagenase (Catalytic Domain) 389 539 IPR024079 GO:0008237
Cca01g00118 681 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 48 678 IPR045090 GO:0004222|GO:0006508
Cca01g00118 681 PANTHER SACCHAROLYSIN 48 678 - -
Cca01g00118 681 Pfam Peptidase family M3 265 676 IPR001567 GO:0004222|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00118 Cca-Chr1 1167363 1180312 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00118 K01392 - gmx:100793518 1193.72