Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00115 ATGGCCGCAAGAACAGTCGCCAAAGACATCATCACTCTTCGTGGTTCCGCAGCAATCGTTAGCGAGTTCTTTGGATATGCTGCCAACAGCATTCTTTACAATCGTGGAGTTTATCCTGAAGAAAGTTTTGTGAAGGTGAAGAAATATGGTCTCCCCATGTTGCTTACTGAAGATGAGGGTGTTAAATCTTTTATAACCAATCTAACTGCCCAGCTCTCTGAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTGGTCCTTGTTATAATGAGCAAGGCAACCAGTGAAGTCCTTGAAAGGTGGAACTTCAGCATTGAGACTGACAGTGAGGTTGTTGAGAAGGGTGTCTCAAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATTCAAGCGATTATGCGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCTTGGATGAACCTTGTGTTTTTGATGTATTGGCATATACTGACAAAGATGTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGCAAATCCACAAATGGTGAAATTGCATTCCTTCGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGATGAATGGGATGAGCAGTAG 624 0.4247 MAARTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFITNLTAQLSEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDSEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00115 207 ProSiteProfiles HORMA domain profile. 14 197 IPR003511 -
Cca01g00115 207 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 1 205 IPR045091 -
Cca01g00115 207 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A 1 205 IPR027097 GO:0007094
Cca01g00115 207 Gene3D HORMA domain 1 203 IPR036570 -
Cca01g00115 207 Pfam HORMA domain 16 191 IPR003511 -
Cca01g00115 207 SUPERFAMILY The spindle assembly checkpoint protein mad2 10 203 IPR036570 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00115 Cca-Chr1 1142600 1144823 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00115 K02537 - gmx:100789307 406.371