Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00111 ATGGGACACTCTGAGGAAAACAGTCATGATACTGCCAAGCAGAAGGCAATCGATGATTGGCTTCCAATCACTGCTTCCCGAAATGCCAAATGGTGGTATTCGGCTTTCCACAATCTCACAGCCATGGTTGGTGCAGGTGTCCTTAGCCTTCCCTTTGCATTGTCAAACATGGGCTGGGGTCCCGGTGCTACTGTGCTTATCTTGTCTTGGGTCATCACCCTCTACACTTTGTGGCAAATGGTTGAGATGCACGAAATGGTGCCAGGGAAGAGATTCGATAGGTACCATGAGTTGGGTCAGGAAGCCTTTGGAGAGAAACTAGGCCTATGGATTGTGGTTCCCCAACAGGTTGTGGTTGAAGTTGGCACGTGCATTGTCTATATGGTCACTGGGGGCAAGTCATTGAAGAAAGTTCATGATACCATTTGCACTGATTGCAAAGAAATTAGGACCTCATATTGGATCATTATCTTTGCTTCTGTGAACTTTGTTCTTGCACAATGCCCCAACTTTAACTCCATCTCTATTATCTCTCTCAGTGCTGCTGTCATGTCTTTGACATACTCAACCATAGCTTGGTGTGCTTCAATAAAAAAGGGGATTGCACCAGATGTGAATTATGGCTCTAGAGCCACCAGCACTGCTGATGGTGTATTCAACTTCTTTTCTGCCTTGGGCGATGTGGCATTTGCCTACGCAGGTCACAATGTGGTTCTTGAAATTCAAGCAACCATGCCTTCAACTCCTGAGAATCCTTCCAAGAAACCCATGTGGAAAGGAGTTATTTTGGCATACATAGGAGTTGCATTCTGCTACTTCCCTGTTGCGTTCATTGGATACTACATGTTTGGAAACTCAGTTGATGATAACATCCTCATCACACTAGAACGCCCTGCATGGCTCATTGCAACTGCCAACATGTTTGTCTTTATCCACGTTGTTGGAGGCTACCAAGTATTTGCTATGCCAGTGTTCGATATGATCGAAACCTACATGGTTAAGAACTTAAGTTTTACACCTTCTGTTGCACTCCGATTAATAACTCGCAGTGTATATGTTGCATTGACAATGATAATTGGCATATGCATCCCCTTCTTTGGTTCTCTTCTTGGATTTCTTGGAGGCTTTGCGTTTGCACCAACATCATACTTTTTGCCCTGTATCATATGGCTTAAACTCAAAAAGCCCAAAAAGTTTGGCTTGTCATGGACAATCAACTGGATCTGCATTGTTCTTGGGGTATTGTTGATGACACTATCTCCAATTGGTGCTTTGAGGAATATCATCGTGTCAGCCAAAAACTACGAGTTCTTCTCGTAA 1320 0.4394 MGHSEENSHDTAKQKAIDDWLPITASRNAKWWYSAFHNLTAMVGAGVLSLPFALSNMGWGPGATVLILSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQEAFGEKLGLWIVVPQQVVVEVGTCIVYMVTGGKSLKKVHDTICTDCKEIRTSYWIIIFASVNFVLAQCPNFNSISIISLSAAVMSLTYSTIAWCASIKKGIAPDVNYGSRATSTADGVFNFFSALGDVAFAYAGHNVVLEIQATMPSTPENPSKKPMWKGVILAYIGVAFCYFPVAFIGYYMFGNSVDDNILITLERPAWLIATANMFVFIHVVGGYQVFAMPVFDMIETYMVKNLSFTPSVALRLITRSVYVALTMIIGICIPFFGSLLGFLGGFAFAPTSYFLPCIIWLKLKKPKKFGLSWTINWICIVLGVLLMTLSPIGALRNIIVSAKNYEFFS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00111 439 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 8 434 - -
Cca01g00111 439 Pfam Transmembrane amino acid transporter protein 28 424 IPR013057 -
Cca01g00111 439 PANTHER OS05G0424000 PROTEIN-RELATED 8 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00111 Cca-Chr1 1097561 1101975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00111 1 439 Organic Solute Cotransporters AT1G24400 75.057 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00111 - - gmx:100786115 790.415