Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00108 ATGTTTGCAGTTCTCCGAACAAGAACGTGGTTACGCTATTCATCGCATTCAGAGTCCCTTCTTCAACAATGTAATAAAGTAGGGTTTTCCTCTCTCTCCGCCGTCAACGGCCGTAACTGCTTTCTGGATCTGCACGAGATCGAGAACGTTCTGACGGACGTTAAAGCTGACGACGTTAAGGTGCTTCCGGTTCCCAAACACTGCGATTGGGCCGATTTCATGGTTCTCGCCACCGGCAGGTCCACGTGGCACGTCAAGAACATCGCTCAAGCCCTAATTTACAAGGCACCTCGTTCGTTCTTCTTTCTCACCGCTAAGCAGAAACAGAGAGGAGCTGAACGAATGGTGCTACCTAGTGTGCAGGGACAAGAGGGAGGAAAATGGATCGTCATTGATTCTGGTAAAGTGATAGTTCATGCACTTGATGAAAAGGCTAGAGCTTACTACAATTTGGAGGGTCTTTGGACCCCAGGGACAAAGCGAAATGAATCTGATGAGGATTTACAAAAAGCTTTGGTGAAGGTTCGTCGGAAAAACAATTCAAAGAAACCTGCACAAAAGAATACTTAA 570 0.4667 MFAVLRTRTWLRYSSHSESLLQQCNKVGFSSLSAVNGRNCFLDLHEIENVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGTKRNESDEDLQKALVKVRRKNNSKKPAQKNT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00108 189 Pfam Ribosomal silencing factor during starvation 46 155 - -
Cca01g00108 189 TIGRFAM rsfS_iojap_ybeB: ribosome silencing factor 45 155 IPR004394 -
Cca01g00108 189 Hamap Ribosomal silencing factor RsfS [rsfS]. 37 156 IPR004394 -
Cca01g00108 189 PANTHER IOJAP SUPERFAMILY ORTHOLOG 24 180 IPR004394 -
Cca01g00108 189 SUPERFAMILY Nucleotidyltransferase 45 160 IPR043519 -
Cca01g00108 189 PANTHER MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1 24 180 - -
Cca01g00108 189 Gene3D Beta Polymerase, domain 2 43 173 IPR043519 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00108 - - gmx:100500386 285.419