Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00103 ATGAAACTGAGTCCGAGGGAGATCGAGAAACTAAGCCTGCACAATGCTGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGACTCAATTATGCTGAAACTGTGGCTCTCATAGCAACACAGATTGTGGAATTTGTTCGTGATGGTGACAAGACTGTTGCACAGCTGATGTCCATTGGGAGAGAACTTCTTGGAAGGAGACAAGTTCTTCCAGCTGTTCCACATCTCGTAGAAAGTGTTCAGGTTGAAGCCACTTTTCGTGATGGGACTGAGTTAGTCACCATTCATGACCCAATCGCTTGCGAGAATGGAAACCTTGAGCTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTACTGCAAACGATGAAGATAATAGAATTCCAGGTGAAATAATAGTTGTAGGTGGAAATCTGGTTCTTAACCATGGAAGAAAAGCAGTAATTCTCAAAGTTGTCAACAATGGAGACAGACCAGTTCAGGTTGGCAGCCACTATCATTTTATTGAACTAAATCCTTACTTAACCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCACACGCTTTGAGCCAGGCGAAAGTAAAAGTGTTCTACTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGAGGTAATAACATTGCTGATGGTCCAGTTAATGATTCCAATTGCATAGCAGCCATGCAGGCTGTGATCACAAGGGGATTTGGACATGTGGAAGAGGAAAATGCTAGGGAAGGTGTTACTGGAGAAGACTATTCATTAACTACAGTAATTTCTCGAGAGGAATATGCTAACAAGTATGGCCCTACAACTGGTGACAAAATCCGTCTTGGTGACACTAACTTGTTTGCTGAAATTGAAAAAGATTTTGCTATCTATGGTGATGAATGTATTTTTGGAGGTGGGAAAGTCATAAGAGATGGAATGGGTCAATCATGTGGCCATCCACCTGAGGGTTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATAGTGGAATTATCAAAGCAGATATTGGTATTAAAGATGGCCTCATTATCTCGATTGGAAAATCAGGAAATCCAGACGTTATGGATGGTGTATTTCATGATATGATAATAGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTTCATTTTATATGCCCTCAATTAGTAGATGATGCTGTAACAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGGCCAGCTGAAGGAACACGTGCAACAACTTGTACACCAGCACCAATTCAGATGAAATTTATGCTGCAATCAACAGATGACATGCCATTAAACTTCGGTTTCACTGGAAAAGGGAATTGTGCCAAACCTGATGAACTGCATGAAATAATCAAGGCTGGAGCTATGGGACTGAAGTTGCATGAGGACTGGGGAACTACACCAGCTGCAATAGACAGTTGTTTGACCATTGCAGAACAATATGATATCCAGGTTAACATACATACCGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGTGGCCATGCACCAGATATCATAAAAGTATGTGGTGAGAAGAATGTCCTTCCCTCATCAACAAATCCCACACGCCCTTATACGTCTAATACCATAGATGAGCATGTTGACATGCTGATGGTCTGCCATCATCTTAAAAGGAATATTCCAGAAGATGTGGCTTTTTCAGAATCAAGAATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTGCATGATATGGGGGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCTGATAAGATGAAGTCACAACGAGGACCACTACAGCCTGGTGAAGAAAATGACAACTTACGGATCAAACGTTATGTTGCAAAGTACACCATAAACCCAGCTATAGCAAATGGTTTCTCGCAATATATTGGTTCAGTTGAGGTGGGGAAGTTAGCTGATCTTGTATTATGGAAGCCATCATTTTTTGGAGCTAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCTTATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTGCACACTCCATTGCTTTTGTGAGCAAGGCAGCTTTGGATAATGGAGTAAAAGCTTCATACGGACTTAACAAGAGGGTTGAAGCTGTGGAGAATGTGAGAAAGCTCACCAAATTAGATATGAAATTGAATGATGCTCTTCCAGAAATCACTGTGGAGCCAGAATCATACACAGTGACAGCAGATGGAGTGGTTCTAACCTGCGCTGCAGCCACTACTGTTCCTCTTTCTCGAAATTACTTCATCTTCTAA 2514 0.4193 MKLSPREIEKLSLHNAGYLAQKRLARGLRLNYAETVALIATQIVEFVRDGDKTVAQLMSIGRELLGRRQVLPAVPHLVESVQVEATFRDGTELVTIHDPIACENGNLELALFGSFLPVPSLDKFTANDEDNRIPGEIIVVGGNLVLNHGRKAVILKVVNNGDRPVQVGSHYHFIELNPYLTFDRRKAYGMRLNIAAGNATRFEPGESKSVLLVSIGGNKVIRGGNNIADGPVNDSNCIAAMQAVITRGFGHVEEENAREGVTGEDYSLTTVISREEYANKYGPTTGDKIRLGDTNLFAEIEKDFAIYGDECIFGGGKVIRDGMGQSCGHPPEGSLDTVITNAVIIDYSGIIKADIGIKDGLIISIGKSGNPDVMDGVFHDMIIGANTEVIAGEGLIVTAGAIDCHVHFICPQLVDDAVTSGITTLVGGGTGPAEGTRATTCTPAPIQMKFMLQSTDDMPLNFGFTGKGNCAKPDELHEIIKAGAMGLKLHEDWGTTPAAIDSCLTIAEQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPYTSNTIDEHVDMLMVCHHLKRNIPEDVAFSESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLQPGEENDNLRIKRYVAKYTINPAIANGFSQYIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVIMRPMFGAFGKAGSAHSIAFVSKAALDNGVKASYGLNKRVEAVENVRKLTKLDMKLNDALPEITVEPESYTVTADGVVLTCAAATTVPLSRNYFIF 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00103 837 Pfam Urease subunit beta-alpha linker domain 232 265 IPR040881 -
Cca01g00103 837 Gene3D - 400 818 - -
Cca01g00103 837 TIGRFAM urease_gam: urease, gamma subunit 1 102 IPR002026 GO:0016151|GO:0043419
Cca01g00103 837 PANTHER UREASE 1 837 - -
Cca01g00103 837 Gene3D Urease, subunit C, domain 1 270 750 IPR011059 GO:0016810
Cca01g00103 837 SUPERFAMILY Urease, beta-subunit 133 262 IPR036461 -
Cca01g00103 837 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Cca01g00103 837 ProSiteProfiles Urease domain profile. 400 837 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 Hamap Urease subunit beta [ureB]. 132 232 IPR002019 GO:0035550|GO:0043419
Cca01g00103 837 TIGRFAM urease_beta: urease, beta subunit 133 233 IPR002019 GO:0035550|GO:0043419
Cca01g00103 837 PIRSF Urease 1 837 IPR008221 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 Gene3D Urease, beta subunit 150 269 IPR036461 -
Cca01g00103 837 TIGRFAM urease_alph: urease, alpha subunit 272 837 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Cca01g00103 837 SUPERFAMILY Metallo-dependent hydrolases 400 837 IPR032466 -
Cca01g00103 837 CDD Urease_gamma 4 100 IPR002026 GO:0016151|GO:0043419
Cca01g00103 837 SUPERFAMILY Composite domain of metallo-dependent hydrolases 679 749 IPR011059 GO:0016810
Cca01g00103 837 CDD Urease_alpha 272 836 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 SUPERFAMILY Composite domain of metallo-dependent hydrolases 271 448 IPR011059 GO:0016810
Cca01g00103 837 Pfam Urease alpha-subunit, N-terminal domain 272 390 IPR011612 -
Cca01g00103 837 Pfam Amidohydrolase family 396 720 IPR006680 GO:0016787
Cca01g00103 837 CDD Urease_beta 133 232 IPR002019 GO:0035550|GO:0043419
Cca01g00103 837 ProSitePatterns Urease nickel ligands signature. 398 411 IPR029754 GO:0016151
Cca01g00103 837 PRINTS Urea amidohydrolase (urease) protein signature 566 583 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 PRINTS Urea amidohydrolase (urease) protein signature 605 621 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 PRINTS Urea amidohydrolase (urease) protein signature 671 686 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 PRINTS Urea amidohydrolase (urease) protein signature 697 710 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 Pfam Urease beta subunit 134 230 IPR002019 GO:0035550|GO:0043419
Cca01g00103 837 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Cca01g00103 837 Hamap Urease subunit alpha [ureC]. 270 837 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cca01g00103 837 ProSitePatterns Urease active site. 588 604 IPR017950 GO:0009039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00103 Cca-Chr1 1016200 1024371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00103 K01427 - gmx:547672 1539.24