Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00101 ATGAAGGGCCTTCAAGTCATGCCACAACCAGAAAAATCGCTCGGCATTCCAGGAGATGGTAGATGTTTGTTTAGATCTGTGGTATATGGTGCATGCCTCAGAACAGGGGAACCATCTCCAAGTCATAGCAGACAAAAAGAACTCGCAGATGAACTCAGAGCCAAAGTTGTGGATGAATTCATCAAGAGGAGGGCAGACACTGAGTGGTTTCTAGAAGGTGACTTTGACACCTATACAGTACAGATGCGAAAGCCTCACATTTGGGGAGGAGAACCTGAACTTCTCATGTCCTCGCATGTTTTACAGATGCCTATAACAGTGCTTATGCAGGATAAGAATTCGAGTAAGCTTAAAGTTATAGCAGAATACGGTCAAGAGTATGGAAAGGATAACCCTATTCGAGTCATCTATCATGGTTATGGCCACTATGATGCATTATTGAAGAGTTCCACTAATTATATGAAGTCTTAG 471 0.4268 MKGLQVMPQPEKSLGIPGDGRCLFRSVVYGACLRTGEPSPSHSRQKELADELRAKVVDEFIKRRADTEWFLEGDFDTYTVQMRKPHIWGGEPELLMSSHVLQMPITVLMQDKNSSKLKVIAEYGQEYGKDNPIRVIYHGYGHYDALLKSSTNYMKS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00101 156 ProSiteProfiles OTU domain profile. 11 149 IPR003323 -
Cca01g00101 156 PANTHER OTU DOMAIN CONTAINING PROTEIN 14 150 - -
Cca01g00101 156 SUPERFAMILY Cysteine proteinases 15 148 IPR038765 -
Cca01g00101 156 Pfam OTU-like cysteine protease 17 143 IPR003323 -
Cca01g00101 156 Gene3D - 10 155 - -
Cca01g00101 156 PANTHER OS09G0487700 PROTEIN 14 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00101 Cca-Chr1 1000374 1002577 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00101 K18342 - gmx:100792132 282.337