Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00095 ATGTCGTTCGCTTCCTCATTCTCGCTGCTCCGCCACCGCGCGGCGGCGTCTTCATCCGGCGTCCCTCTCTTGCGCCGCTTCCGCTTCCTCCCAACCGCTGCGAGACACCAAAACCCTAACAACCACCCCGCCGCACCGAGCAGAAACCTCCTGAAGGCGAAACAAACGCTGAAGGAGTTCTCCTCTCTCGCTCCGGTCCTCTCCCTGGAAGACGTTCCCTCTCTCACGGAGTCCCAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTACCGGAAGACGAACCTTCCTCTTCCGGAACGTTCCGCGGCGTGGAGCTTCTGTGCGTGGTGAGGGCGCTGCTGAAGAAGATTAAGCGCAGGGTTATGGTGGGTGACAAGGTGCTGGTTGGTTCCATCGATTGGGTGGATCGCAGGGGCATGATTGAGAATGTGTTTAATCGGAGTTCGGAGATTCTTGACCCTCCCGTTGCTAATGTTGACCACTTGCTCGTGCTGTTCTCGCTCGAGCAGCCCAGGCCTGAGCCGTTTACACTCACCAGGTTTCTCGTCGAAGCGGAATCCACCGGGATTCCTCTCACGCTCGCGCTCAATAAGATGGAGCTTGTGGATAAAGAGATCATTAGTTCGTGGAAGGCTAGGTTGCGCGGCTGGGGATATGAGCCAGTTTTTTGCAGCGTTGAATCTGGACATGGGCTTGATCTTCTTGCGTTCAAGTTGAGAGATCAAACGACAGTGATTGTGGGTCCTAGTGGAGTTGGGAAATCGAGTTTGATAAATTCCCTTAGAAGCAATCCTTCTGATGCTGCCGAAGGGGAGAATTGGTTTGAGCCTATTTTGGGAAGCAAGTGGTTAGATGATCAGCGAGTTGGGGAGGTTTCCACAAGAAGTGGTAGAGGGAAACATACTACTCGCCATGTATCTCTGCTTCCATTATCTGGAGGGGGATTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATAAGGAAAATGCTTAGTGCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCTGGGTGAACCTGGGTGTGTTGTGAAGGGAGATTGGGAAAGATATTCATACTATTTTCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTGAGGACATTTGGAACTAAAAGAGAAGGCGATGTAAGGATTAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAAAAGCACAGGAGACAATCTCGGAAGAGGATTAACCAGTCGATTTTAGATGAATTGGATGATGACGACAATTTGCTAGATGAGGAAAATGACCCCATTTTAAGGGCGCTTAGGAATGAAAACTCTTAG 1419 0.5032 MSFASSFSLLRHRAAASSSGVPLLRRFRFLPTAARHQNPNNHPAAPSRNLLKAKQTLKEFSSLAPVLSLEDVPSLTESQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDDDDNLLDEENDPILRALRNENS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00095 472 Gene3D - 74 150 IPR012340 -
Cca01g00095 472 Gene3D - 151 334 IPR027417 -
Cca01g00095 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 71 454 - -
Cca01g00095 472 SUPERFAMILY Nucleic acid-binding proteins 80 153 IPR012340 -
Cca01g00095 472 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Cca01g00095 472 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 270 IPR004881 GO:0003924|GO:0005525
Cca01g00095 472 Gene3D Probable gtpase engc; domain 3 336 398 - -
Cca01g00095 472 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Cca01g00095 472 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
Cca01g00095 472 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 80 397 IPR004881 GO:0003924|GO:0005525
Cca01g00095 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 71 454 IPR004881 GO:0003924|GO:0005525
Cca01g00095 472 MobiDBLite consensus disorder prediction 418 443 - -
Cca01g00095 472 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
Cca01g00095 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 395 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00095 K06949 - gmx:100796145 815.839