Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00087 ATGCAAACTAAGAAAAAATCCTCCCGGCGAAATGCTAGTCAAGAGTGTGGCAGTCCTAGGGTTTCAAGATCACAGAGGAAGGCTTCTGAAAATGGACGAGCAGTTGAAAAGAAAGTCACAGACTTAATTACATCATCAGCCAGAAAGTGTAAATCTCTTAGCACTCTTGAGAATAAAGCTGGAAAGCCCATCCCCTCAACAGATTTGAATGATGGATATGAGCTTATGGACAGTGAGACTTCCAATGCTTGTTTGGAAAATGATACAGTTAATGGCGTTCCATTAGATTTTATGGGTTGTAACAATGAAGCTGTTCATCTGGAGTCTGGAACTATATTCTCTCCTGGATTTCACTTTTCCAAAAATTCTGGAGGAAAAGTTGTTGATAGAGTTGATTTTGTCAAAATTTTTCAGAAACAAGAATTAGAGTTACCACAGGAAGATGCAGTGGATGGTCATGTTAGTCAAGACTTTGACACTGCAATGGAGGTAGACACAAACAATTTGTCCAACTACTCTAATTCAGGGAGATGTGACAGTGACAATCAGATGCATGCTTTAAGCACAAAAAATGTCAATGGTTGTAATTCTGATTATGATGGAAACGGTCTTTCCTTGGAAGTTTCTGCCATATATCTTGCCATGAAAAACTCAAAGCTGGAATGTGTCGATGAGCACAGTCAGGATCCCATGTCTTCTGAAATATGCACAGAGGAGGATGAATTTGAGGATTTTGATGACTTCGACCCATACTTATTCATAAAGACCTTACCAGACTTGTCAACGGTGGTTCCTACTTTTAGGCGACTGTTGCTACCTAAACAGACACGGAGTTGTCCTTCTACTACTCTTGTCCTGGACTTGGATGAAACTTTGGTGCATTCTACCCTGGAACCTTGTGAGGAGGTAGACTTCACTTTTCCTGTTAATTTCAATTCTGAGGAGCACATTGTCTATGTGCGCTGCCGCCCTCACCTCCAAGATTTCCTTGAGAGagtttctggtcttttcgagattattatattcacagctagtcaaagtatttatgccgagcaacttctAAATGTGCTTGATCCAAAGCGGAAGATATTTCGCCACCGGGTTTATCGCGAATCCTGTGTTTATGTGGAAGGGAATTACCTCAAAGATTTAACAGTGCTTGGTCGTGATTTGTCACGTGTTATAATAATTGACAATTCCCCACAGGCATTTGGATTCCAAGTAGACAATGGAATACCGATTGAGAGTTGGTTTGATGATCGTTCAGATCAAGAGTTGCTTTTATTACTTCCGTTCTTGGAGAGCTTGGTTGGTGTTGATGATGTTCGCCCACTAATTGCAAAGAAATTCAACCTGCGGGAGAAAATTGCTGCAGCTGCACATCCTCTAAATACAAATAGAAGAGATTTCTTATCAGAATGA 1422 0.3889 MQTKKKSSRRNASQECGSPRVSRSQRKASENGRAVEKKVTDLITSSARKCKSLSTLENKAGKPIPSTDLNDGYELMDSETSNACLENDTVNGVPLDFMGCNNEAVHLESGTIFSPGFHFSKNSGGKVVDRVDFVKIFQKQELELPQEDAVDGHVSQDFDTAMEVDTNNLSNYSNSGRCDSDNQMHALSTKNVNGCNSDYDGNGLSLEVSAIYLAMKNSKLECVDEHSQDPMSSEICTEEDEFEDFDDFDPYLFIKTLPDLSTVVPTFRRLLLPKQTRSCPSTTLVLDLDETLVHSTLEPCEEVDFTFPVNFNSEEHIVYVRCRPHLQDFLERVSGLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLSRVIIIDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAAHPLNTNRRDFLSE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00087 473 MobiDBLite consensus disorder prediction 1 37 - -
Cca01g00087 473 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 282 445 IPR011948 GO:0016791
Cca01g00087 473 Pfam NLI interacting factor-like phosphatase 283 443 IPR004274 -
Cca01g00087 473 SMART forpap2 280 424 IPR004274 -
Cca01g00087 473 Gene3D - 267 451 IPR023214 -
Cca01g00087 473 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 460 - -
Cca01g00087 473 CDD HAD_FCP1-like 283 414 - -
Cca01g00087 473 SUPERFAMILY HAD-like 271 447 IPR036412 -
Cca01g00087 473 ProSiteProfiles FCP1 homology domain profile. 277 436 IPR004274 -
Cca01g00087 473 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00087 Cca-Chr1 898318 903407 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00087 K17616 K12778 gmx:100804307 806.979