Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00082 ATGTACGGATCCGAGAATAACCGCGAAGACTCGGAGCGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAAAAAAAAACAACCAAAATCCGTTGACCTAACGGAGGTCCTTGACTTCAGATCCATTCTACAATGCCATCTTCAAAACGGTGCGCTTCCTCCGGGTGTTATCGTTCTTCACGACAAATTCACTTCACCAGTTTTTTCCTTGCAAAATCACCCAGGGTTTTATTTTATTCCTGGGGCATTAAACGTAGAGAAACAATGTAGTTTGATAAGGGAGAGTTTGGTTGATTTTCCGCAGCCACCTAACAGAACAAATCACAATGCCATGTATGGTCCTGTTCAGGATGTGTTTGTTGCGGCCAAGGAAGGGAAGGTCTTGGTTGAAGACAACTCTGACTCTCCAAAAGGATGGAAGTTTACTACTGAAAAGGATGCGTCGTTGAGGAAGTGCAGATCGGTTTCTGGTTCTGCGTTGCTTCGGAAGTTGCGGTGGAGCACCCTTGGCCTACAATTTGATTGGTCCAAGCGGAATTACGAAGTGTCTCTCCCACATAACAAAATCCCTGATGCACTGTGTGAGCTTGCCAAACAACTGGCAAAGCCTGCTTTGCCTGCTGGTGTTGAATTCAGGCCTGAAGGTGCAATAGTGAATTACTTTGGCTTAGGGGACACACTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTTTAAGTCTGGGCTGCAAAGCTATATTTCTTTTGGGAGGAAAATCCAGAGAGGATACGCCCCTGGCAATGTTCCTTCGAAGTGGCGATGTTGTTCTTATGGCTCGAGATGCAAGGGAATGCTTTCATGGGGTTCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACAGCTGACGCATGAAGATGATCTTTGTTTCTTAAAATACATTCAAACTTCTAGAATCAACATCAATATCAGACAAGTTTTTTGA 1038 0.4461 MYGSENNREDSERTAFRRAEKKYKLYYDNNASSKNKKKKQPKSVDLTEVLDFRSILQCHLQNGALPPGVIVLHDKFTSPVFSLQNHPGFYFIPGALNVEKQCSLIRESLVDFPQPPNRTNHNAMYGPVQDVFVAAKEGKVLVEDNSDSPKGWKFTTEKDASLRKCRSVSGSALLRKLRWSTLGLQFDWSKRNYEVSLPHNKIPDALCELAKQLAKPALPAGVEFRPEGAIVNYFGLGDTLGGHLDDMEADWSKPIVSLSLGCKAIFLLGGKSREDTPLAMFLRSGDVVLMARDARECFHGVPRIFTDKENAEIGHLETQLTHEDDLCFLKYIQTSRININIRQVF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00082 345 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 225 345 IPR005123 -
Cca01g00082 345 PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB 1 345 - -
Cca01g00082 345 Pfam 2OG-Fe(II) oxygenase superfamily 141 342 IPR027450 -
Cca01g00082 345 Gene3D - 143 344 IPR037151 -
Cca01g00082 345 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED 1 345 IPR004574 -
Cca01g00082 345 SUPERFAMILY Clavaminate synthase-like 87 344 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00082 K10765 - gmx:100797068 602.053