Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00078 ATGTCTCAGGTTGATAACAGAAATTCCTCAGCTGCTAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGACGATTGGACATGCCCTAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCGAGGCCCGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTCCAAGTTCCACAGGGCTATTCATCCTCAGCTCCTTACATAGGTTCTAATACTCCCTCTTCAATTTATCTTGGTGTTCCACCATACGGGTCTTCTCTGTTCAATGGGTCGTCCATTCCTCCCTATGAAGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGTCTTTCTGCTGGCAGTCCTTATAGACCGTTGCACTTATCTGGACCTACACCTTACACCAGTGGATCAATGATCGGAAATGCAGGTGGGATCTATGGCATGCCCCAACTGTTGGATCGGTATGGCCTGGGTGTGCCTATTGGCCCTGGGACAATGGGTGCTAGGCCAGGATTTTTTCGTGATGACAAGTCTCAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTGAATTTCTCGTTCAGAACTGTCTGCAACATGAGGAAGTGTAACACACCCAAACCTGGATCCCAGGCCTCAAAATCTGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGTGAAAAGTGTAATAACATAAATTATCCATTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCAGAAAAATCTGCTTCACCAGCTGGAGATCAAAGTGATCAGTGA 855 0.4573 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQVPQGYSSSAPYIGSNTPSSIYLGVPPYGSSLFNGSSIPPYEVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTSGSMIGNAGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFRDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSASPAGDQSDQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00078 284 Pfam Zn-finger in Ran binding protein and others 193 222 IPR001876 -
Cca01g00078 284 Pfam Zn-finger in Ran binding protein and others 238 268 IPR001876 -
Cca01g00078 284 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Cca01g00078 284 SUPERFAMILY Ran binding protein zinc finger-like 185 224 IPR036443 -
Cca01g00078 284 MobiDBLite consensus disorder prediction 1 25 - -
Cca01g00078 284 MobiDBLite consensus disorder prediction 180 194 - -
Cca01g00078 284 Gene3D - 183 224 - -
Cca01g00078 284 Gene3D - 227 270 - -
Cca01g00078 284 Gene3D - 14 54 - -
Cca01g00078 284 MobiDBLite consensus disorder prediction 263 284 - -
Cca01g00078 284 MobiDBLite consensus disorder prediction 175 194 - -
Cca01g00078 284 MobiDBLite consensus disorder prediction 11 25 - -
Cca01g00078 284 MobiDBLite consensus disorder prediction 219 247 - -
Cca01g00078 284 PANTHER OS08G0521400 PROTEIN 5 275 - -
Cca01g00078 284 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Cca01g00078 284 SMART zf_4 24 50 IPR001876 -
Cca01g00078 284 SMART zf_4 240 266 IPR001876 -
Cca01g00078 284 SMART zf_4 194 220 IPR001876 -
Cca01g00078 284 PANTHER ZINC FINGER PROTEIN 5 275 - -
Cca01g00078 284 SUPERFAMILY Ran binding protein zinc finger-like 232 269 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00078 Cca-Chr1 808899 813229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00078 181 271 EF-hand Containing Proteins AT1G55040 31.868 2.23e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00078 - - gmx:100798624 582.793