Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00067 ATGCCCATCTTCTCTGCAACGTTGGGTTCCATCTCCTTCCTCTCTGCTTCACAATCTCAATCAAACCTTTCTCCTTTCAAGTTAACTGTGAAGTCACCTTGTCAATGGCATCATTACTATCACACTACTAAAGTCTTCGTCTCTGGCAACACCCAAATTGACCAAAATCCTGACACTGGACTCCTTCAACGCCCTACTCCTCCTTCTCCAGACCCTCAGGATGTCACTCGTCAGGCTCGGAGATCGTCAGATTGGAAGGCTGCAAAGGCATATAAAGATAGTGGACTCATTTATAGTGGTAGAGTTGAAAATTTTAATTCTGGTGGCCTTCTGGTTCGGTTTTTTTCTATTCTGGGGTTTCTCCCGTACCCACAATTGAGTCCGATGCATGCTTGTAAAGAACCAGAGAAATCTATCCAAGAAATTGCAAGAGGCTTACTCTATTCAAACATACCGGTTAAGGTAATTCTAGCGGATGAGGATAAGAGAAAATTGATCTTCTCTGAAAAGGAAGCTGCGTGGTCCAAATTTTCAAAACAGGTCAACGTAGGGGATATTTTTGAAGCAAGAGTTGGTTATGTTGAGGACTATGGTGCTTTTGTTCATTTGCGCTTCCCTGACGATCTTTATCGCCTTACTGGACTAATACATATCTCAGAAGTGTCCTGGGATCTAATTCATGATGTCAGAGATATCTTAAAAGCAGGTGATGAAGTGAGGGTCAAAGTTGTCGGTATTGATTGGGGAAAATCAAGGATTAACCTATCAATAAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGGTTCAGCTGATCCTGATTCTACGAGCAGTATTGATAGCGGTGACATTGAGCCTCTTCCAGGGCTTGAAACAATCCTTGAAGAGCTACTACAAGAAGAAGGTATATATGATGTAAGAATCAGCCGTCAAGGGTTTGAAAAACGAGTGGTCTCGCAAGACTTGCAACTTTGGCTATCTAATGCCCCTCCCATAAACCAAAGGTTTACTCTCCTTGCTCGGGCTGGAAGACAGGTGCAGGAGATACATCTGACCACATCCCTTGATCAGGATGGTATCAAGAAGACATTACAACGAGTATTGGAGCGTGTTCCCTGA 1143 0.4304 MPIFSATLGSISFLSASQSQSNLSPFKLTVKSPCQWHHYYHTTKVFVSGNTQIDQNPDTGLLQRPTPPSPDPQDVTRQARRSSDWKAAKAYKDSGLIYSGRVENFNSGGLLVRFFSILGFLPYPQLSPMHACKEPEKSIQEIARGLLYSNIPVKVILADEDKRKLIFSEKEAAWSKFSKQVNVGDIFEARVGYVEDYGAFVHLRFPDDLYRLTGLIHISEVSWDLIHDVRDILKAGDEVRVKVVGIDWGKSRINLSIKQLEEDPLLETLDKVIPQDGSADPDSTSSIDSGDIEPLPGLETILEELLQEEGIYDVRISRQGFEKRVVSQDLQLWLSNAPPINQRFTLLARAGRQVQEIHLTTSLDQDGIKKTLQRVLERVP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00067 380 SMART S1_6 182 258 IPR022967 -
Cca01g00067 380 SMART S1_6 93 170 IPR022967 -
Cca01g00067 380 MobiDBLite consensus disorder prediction 56 82 - -
Cca01g00067 380 Gene3D - 174 263 IPR012340 -
Cca01g00067 380 MobiDBLite consensus disorder prediction 273 294 - -
Cca01g00067 380 Pfam S1 RNA binding domain 181 258 IPR003029 GO:0003676
Cca01g00067 380 Gene3D - 85 173 IPR012340 -
Cca01g00067 380 PANTHER OS03G0844900 PROTEIN 10 380 - -
Cca01g00067 380 ProSiteProfiles S1 domain profile. 184 258 IPR003029 GO:0003676
Cca01g00067 380 SUPERFAMILY Nucleic acid-binding proteins 95 170 IPR012340 -
Cca01g00067 380 ProSiteProfiles S1 domain profile. 95 170 IPR003029 GO:0003676
Cca01g00067 380 SUPERFAMILY Nucleic acid-binding proteins 171 263 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00067 - - gmx:100798303 613.994