Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g00065 | ATGGCGCCTCCCATTCCCAAAGTTCTCATGGTCGCGGAGAAGCCTAGCATCGCTCTCTCTATTGCTTCTGTTCTCTCACGCGCTCAGATGTCTACAAGAAGGGGAAGCACGGAAGTTCATGAATTTGAGGGGAAGTTTCTTGGTTCTCCTGCTCGTTTTAAAGTAACATCAGTTATTGGGCATGTATTCAGTGTAGATTTTCCCGGTAAATATCAAGATTGGTCAGCCACAGATCCATTAGACCTTTTTCAGGCTCAGGTTATAAAGACTGAATCAAACCCAAAGGCGCATATCTGTAGACATTTAAATCAAGAAGCTCGGGGATGTCGTTATCTAGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGCTTTGAGGTTATAAACTCTACTGGTTTCAGTATAAATGATACTTATCGTGCACGGTTCTCTTCTGTTACCGAGAAAGATGTTCTGAAGGCTCTAGACAACCTTGTCAGACCAAACAGAGATGAGGCGCTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAGGTTGGAGTTGCCTTTACTCGATTTCAAACGAGTTATTTCCAGGGAAAATATGGGAACCTAGACTCCAGAGTTATATCGTATGGACCATGTCAAACTCCTACCTTGGGATTTTGCGTGCAGCGGTATTTACAAATAAACACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATGCAAAGTGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAACCTGGTTTCCGAAGATGGACTTTTGGAAGTTACTGAAATATCAGAAAAGCAGGAAACGAAAGGCCGACCTATTGGACTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCATATGGCTATGCAACTAGCTGAGCGATTGTATACTCAAGGTTTCATCAGCTATCCACGCACTGAAAGCACTGCATACCCTACTTCATTTGACTTTCGTGGTGTACTCTCTGCACAATCAAATAATCCAACATGGGGTAATTATGTACAAGGGCTACTAACCAATGGTTATCAAAAACCTCGATCAGGAACTGATGTAGGTGATCATCCTCCTATTACTCCAATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATATAAGGAGAAAGGTTGAATTTTCCGTAGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTCATCACCAAAGGATTTACTGCTATTATGCCTTGGTTGGCCATAAATGATAAAATTATTCCATCATTTATAAAAGGGCAGAAAATTGAAGTATCAAAATTGGAGCTCTATGAGGGGAAGACCTCTCCTCCTGATTACCTTACTGAAAGTGAGCTGATCTCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCAGTACATATTAACAACATATGTGAACGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCACTTTAGGCATAACATTAGTAAGAGGTTATCAAACAATAGATCCAGACCTCTGTCTGCCTGATATTCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCTAGGGGTCAGGTTGATCATCGTTGTGTGGTGCAACATGTAATCCAACAGTTCAAGCAGAAGTTTAGTTATTTTGTCAAGAAGATTGAAGACATGGATGCGTTATTTGAGGCACAGTTTTCTAATCTTACCGATTCAGGGCGTGTTATGAGTAAATGTGGTAAATGCTTGCGATATATGAAGTACATTTCTGCTCAGCCAACACGATTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCACAGAAGGGCTCAATCAAGCTATACAAAGAATTGACTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGTCCAGAGGGTAAATCATTCCCACTATGCCCATACTGCTACAGCAATCCCCCATTTGAAGGTATTGAAGCACTCATCAATACAGCTAAAACTGGTACTTCTGGCAAGATTGGCAAGGGAGCTGGCATGCCCTGCAACCTATGCCCTCATCCCACTTGCCCAAATTCTCTGGTTTCTCAGGGCGTATGTGCTTGCCCAGAGTGCAGCGGGACACTTGTCTTAGACCCAAGCAGTGCCCTGAATGCGAATCTTCAATCATTGAAGTAG | 2277 | 0.4212 | MAPPIPKVLMVAEKPSIALSIASVLSRAQMSTRRGSTEVHEFEGKFLGSPARFKVTSVIGHVFSVDFPGKYQDWSATDPLDLFQAQVIKTESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVINSTGFSINDTYRARFSSVTEKDVLKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIMQSGYEIQLEWQRGKLFDINVAMMFQNLVSEDGLLEVTEISEKQETKGRPIGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGFISYPRTESTAYPTSFDFRGVLSAQSNNPTWGNYVQGLLTNGYQKPRSGTDVGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSVGGESFHCTGQHVITKGFTAIMPWLAINDKIIPSFIKGQKIEVSKLELYEGKTSPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIARGQVDHRCVVQHVIQQFKQKFSYFVKKIEDMDALFEAQFSNLTDSGRVMSKCGKCLRYMKYISAQPTRLYCGTCEEVYYLPQKGSIKLYKELTCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIEALINTAKTGTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPSSALNANLQSLK | 758 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g00065 | 758 | CDD | TOP1Ac | 166 | 584 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | SMART | toprim5 | 7 | 138 | IPR006171 | - | |
| Cca01g00065 | 758 | Pfam | Toprim domain | 8 | 147 | IPR006171 | - | |
| Cca01g00065 | 758 | SUPERFAMILY | Prokaryotic type I DNA topoisomerase | 7 | 624 | IPR023405 | - | |
| Cca01g00065 | 758 | Gene3D | Topoisomerase I, domain 4 | 289 | 414 | IPR013826 | - | |
| Cca01g00065 | 758 | CDD | TOPRIM_TopoIA_TopoIII | 7 | 160 | IPR034144 | - | |
| Cca01g00065 | 758 | SMART | topIaneu2 | 281 | 536 | IPR003602 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PANTHER | DNA TOPOISOMERASE 3-BETA-1 | 6 | 752 | - | - | |
| Cca01g00065 | 758 | Gene3D | Topoisomerase I, domain 3 | 229 | 482 | IPR013825 | - | |
| Cca01g00065 | 758 | PRINTS | Prokaryotic DNA topoisomerase I signature | 205 | 223 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PRINTS | Prokaryotic DNA topoisomerase I signature | 498 | 512 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PRINTS | Prokaryotic DNA topoisomerase I signature | 112 | 125 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PRINTS | Prokaryotic DNA topoisomerase I signature | 400 | 416 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PRINTS | Prokaryotic DNA topoisomerase I signature | 323 | 332 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | PANTHER | PROKARYOTIC DNA TOPOISOMERASE | 6 | 752 | IPR000380 | GO:0003677|GO:0003917|GO:0006265 | |
| Cca01g00065 | 758 | ProSitePatterns | Prokaryotic DNA topoisomerase I active site. | 318 | 332 | IPR023406 | GO:0003917 | |
| Cca01g00065 | 758 | ProSiteProfiles | Toprim domain profile. | 7 | 147 | IPR006171 | - | |
| Cca01g00065 | 758 | SMART | topIban2 | 139 | 235 | IPR003601 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | Gene3D | - | 2 | 163 | - | - | |
| Cca01g00065 | 758 | Pfam | DNA topoisomerase | 163 | 573 | IPR013497 | GO:0003677|GO:0003916|GO:0006265 | |
| Cca01g00065 | 758 | Gene3D | Topoisomerase I, domain 2 | 170 | 584 | IPR013824 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g00065 | Cca-Chr1 | 672906 | 683292 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g00065 | K03165 | - | gmx:100791807 | 1470.29 |