Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g00060 | ATGTCTGAGATGGCGAACCCAGATCCCGAGGGCGTGGACGGAGTCCGCATGACGTGGAACGTGTGGCCCCGGACGAAGGTGGAGGCGAGCAAGTGCGTGATCCCTCTGGCGGCGACGGTGGCCCTGATCCGCCCCCACACGGACATCCCCCGCCTCCCCTACGCCCCTCTCCGCTGCAAGACCTGCTCATCCGCCCTCAACCCCTTCTCCCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACCACGCCATTTCCGAGACCAACCTCCCCGGCGAGCTCTACCCGCAGTACACCACCGTCGAGTACAACCTCCCCCTCTCCGCCAACTCCCTCAGCCCCTCCCCCGTCTTCCTCTTCCTCCTCGACACCTGCCTCATCCACGACGAGATCCTCTTCCTCAAGTCCGCCCTCCGCCGCGCCGTCGGCCTCCTCCCCGACAACGCCCTCGTCGGCTTCGTCTCCTTCGGGACTCAAGTCCAGGTCCATGAATTGGGCTTCTCCGACATGTCCAAGGTCTACGTCTTCCGCGGCAACAAGGACATCCCCGCTGATCAGGTTCTCGACCAGCTCGGCCTCTCCGCCCCCGGGAGGAGGCCGCACAAGGgcggccccgtcgccgcctccactgccgccgccgccgccTTCCCCAATTCCGCCATCACGCGCTTCTTGCTGCCCGCCTCTGATTGTGAATATACTCTCAATTCGCTGTTGGATGAATTGCAGACGGATCAATGGCCGGTTCCGCCGGGGCGGCGGCCTGCGCGCTGCACGGGGGTTGCTTTGAGTGTGGCTGCGGGATTGCTGAGTGCTTGTACTCCTGGGACTGGTGCTAGGATCATAACTTTGGTTGGGGGGCCGTGCACGGAAGGACCTGGCGCGATTGTGTCGAAAGATCTATCTGACCCGGTGCGGTCTCATAAAGATCTTGATAAAGATGCAGCGCCATACTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAAGGTCACGTTTTAGATATTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCGGTTGAAAGAACTGGTGGCCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCTGTCTTCAAGGACTCTTTTAAGCGAGTTTTTGAGGACGGGGAGCAATCTCTGGGTCTTTGTTTCAATGGAACCTTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAATAATTGGACCTTGCACTTCATTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGCTATAGGAGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACGTGCTTGACTGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTCCTTACAAGTTACCAGGGTCCAAATGGTCAATCAGTGCTTCGTGTCACAACTGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCTGTTGTAATGGCTAGATTTGCTTCACTTAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTTATTCGCCTTTGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTACGACGTTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAAACTGCATATTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCGTCACTGATAGCGTATTCATTTAATTCCCTGCCTGCACCAGCATTGTTAGATGTGGCTTCAATTGCTCCAGAGCGAATTTTGTTGCTAGATGCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCTTTTGCGCAACTATTACGAGCTCCACATGACGATGCCCAAATGATAATTAAAGAACGGTTCCCTGTTCCTAGATTGGTAGTGTGTGACCAACATGGTTCCCAGGTCAGTATAGTTTACCAAGACCAGTTTGAGTGTTATTTGTCTTCATTAACTGTTGCGGTTTCTTTTCCTAAAATTCAGTCATATTAA | 2253 | 0.4953 | MSEMANPDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATVALIRPHTDIPRLPYAPLRCKTCSSALNPFSRVDFTAKIWICPFCYQRNHFPPHYHAISETNLPGELYPQYTTVEYNLPLSANSLSPSPVFLFLLDTCLIHDEILFLKSALRRAVGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGNKDIPADQVLDQLGLSAPGRRPHKGGPVAASTAAAAAFPNSAITRFLLPASDCEYTLNSLLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACTPGTGARIITLVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADTAIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQLYLQFLTSYQGPNGQSVLRVTTVTRRWVDSSVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAPERILLLDAYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIKERFPVPRLVVCDQHGSQVSIVYQDQFECYLSSLTVAVSFPKIQSY | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g00060 | 750 | Gene3D | Severin | 633 | 729 | IPR029006 | - | |
| Cca01g00060 | 750 | Gene3D | Sec23/Sec24 helical domain | 513 | 632 | - | - | |
| Cca01g00060 | 750 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 8 | 525 | - | - | |
| Cca01g00060 | 750 | Pfam | Sec23/Sec24 trunk domain | 127 | 397 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca01g00060 | 750 | Pfam | Sec23/Sec24 beta-sandwich domain | 408 | 512 | IPR012990 | - | |
| Cca01g00060 | 750 | SUPERFAMILY | Helical domain of Sec23/24 | 526 | 628 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca01g00060 | 750 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 1 | 727 | IPR037364 | - | |
| Cca01g00060 | 750 | Gene3D | von Willebrand factor, type A domain | 127 | 406 | IPR036465 | - | |
| Cca01g00060 | 750 | Pfam | Sec23/Sec24 helical domain | 526 | 622 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Cca01g00060 | 750 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 48 | 118 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Cca01g00060 | 750 | Gene3D | - | 53 | 112 | - | - | |
| Cca01g00060 | 750 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 629 | 722 | IPR036180 | - | |
| Cca01g00060 | 750 | Pfam | Gelsolin repeat | 638 | 722 | IPR007123 | - | |
| Cca01g00060 | 750 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 1 | 727 | - | - | |
| Cca01g00060 | 750 | Gene3D | - | 10 | 509 | - | - | |
| Cca01g00060 | 750 | SUPERFAMILY | vWA-like | 128 | 398 | IPR036465 | - | |
| Cca01g00060 | 750 | Pfam | Sec23/Sec24 zinc finger | 56 | 94 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g00060 | Cca-Chr1 | 634968 | 641521 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g00060 | K14006 | - | gmx:100813940 | 1335.47 |