Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00058 ATGTACTGGTGCAGCGACGTGGATGACGTTGACGACGATGGGTTTTCATGCTCTCAAGGCCATCGATCTTCTTTGAACCTGCAAACGCACGAGGGCGCTTCAATCTGCCTCGTGTGCTTCTCCAACCTCCTCTCCAACCCCCTCTCCCCCACCGTCCATGTCTCCTACGCTCTCTCCATGCTCTCTCGATCCCTCTCCATACCTCTCTTCCTTCAATCGCTCCTCAAATTCCACCCGCACTTCCTCGTTTCGCCTCTCGTCGCCGCCCTCTCCTCCTTCCACGACGAACCTATCGCCGCTCAGCTCACTCACCTCGTCCTCGCCCTCTCCGCGTCCGCCGATCCTTCCGTTTGCCGCGAATTCGTCGCTAGGGTTTCCGATCGCGTTTCTTCTGGTGCTCTCGGATGGACTTCCCCTCAGTTGCACATGCTTCACTGCCTTGGGGCTCTTCTGAATTGTGAGAAGGATAATGATCTCCATGCACACATAAAAGATATGTGTAGCCTCATTTCTGTTCTTGTTACGGGGCTTCATTTGCCGAGTGAGGAGATTCGAGGGGAGGTTCTCTTTGTCCTTTACAAATTATCTGTTCTTCAGAGTACATCAGCAGAGGGAGATGGAAGTGATATGTTGATTCCCTTTTGTCCTCAGATCTTGTACCTGTTGGTCGATGTTCTCATGAAGACTCAAAATGATGATGTTCGCTTGAATTGTATCGCACTTTTGACTATGCTTGCTCGAAGACATTTGCTCAGGGAAGAATGTGCATATGATACTAGTAACATGTCTTCCTATGAAGGATTTAATTCTAAAGAAACCGAAGAAGGAACCAAGGGCACATCCCTGGTAAATCTGTTTGCTGAAGCCATCAAAGGCCCATTACTTTCGTCAGACAGTAAAGTACAAATCGGCGCTCTAGATTTACTTTTTCATTATTTGTCTTCAGTCAGCACTTCAGGCTATCAGATTAGAGTCTTGGTGGAAGAAAATATTGCAGATTATTTATTTGAAATATTGAGATTGTCAGAGTATAAGGATCCAGCAGTCAAGATGTGCCTTCAGGTACTAGGTCATTTATCAACTGCTGAGGAAACCTTTAAACTAAGACTCGTTGTTGGAATTTCAACTCTGATTCCAGCATTACGTTATGTGGCTGAAGTTCCTTTTCACCCTGTCCAATGTGAGACGCTGAAGCTCATTTATGAATGCATTTCTGGGTGCCCCGGATCTGTATCAACTTCTCAACTAGAGGAACTGATTCAGGTTTTGATAAGAATGCTTAGAAAACATTCTGATGGGGACATGGGTATGATTCCTGAGACGTTTATAATGGTCTGCTCTGTCTTTGTGGCTCTTATAAGATCTCCATCTTGTAATGGAGCTTTAGATCTGTCAAAACCAATTGAGGAAGCAACGACACATGCCATTTTAGCTTGTCTCTCTGTCTCTGAAAGGAATATCAACCAAATTTTGCAATGTTTGTACCTACTTAAAGAGGCATATGCATACAGTCATGATGGAAACTCCATTAACTCTAGTAAACTAGAACTCAGAAGCGGTATTCTAGATTTATGCAGATCTCATTTACTGCCATGGCTTGTATTGGGCATCAATGAAATGGAAGAGGACATTGCCCTGGGTTTGCTGGAAACTTTTCATTCGATACTGCTTCTGCACTCTAGTACTAATACCACGGAATTTGCAGAGACTCTGATTTCATCCGGTTGGTTCAGTTTTTCATATGAATGTTTGGGTTTGTTTACAGGAGATAGCATGAAAAATAGAATATATTTATTGCTTAGTTCACTCATGGATTCTCTCCTACAAGATGATTCTGGACAACCAATTAGAGAGGCTGCTTTACACCTGCCCCGCGATCCTATTGATTTACTCTTTTTGCTCGGGCAAAGGAGTACTAACAGTTTGGATTTGCCTTCTTGTCAATACGCTGTTTTGCTAATCATGTACTCCAGTTCACTATATGATGAAAGACTTGCAGATGAGAAGTTGATTTTAGCTTCTCTTGAACAATATATTCTTCTTAATAGGGTCGATTTTCTTAATCAGACCACTAATAATTTGATCGTGACACGACTGGTAAATCTTTACAGTTTATTAAGGGGTCTTGGCAATATGAGTTACCAAATTCACTACAGTCGAGAAGCGGAGGAGATAATATTCCAGTTCATAAATAATGATGAATGGGATTTACTTTCCGCAAGAATTCACAAGGTATCATTGAAGTGGTTGTTTCAACAAGAGAACATAGTCAATTCATTATGCCACCAGATTTTGAAATTCTGCAGAAGCTATAACTTAGAAGAGGCTGACATAGTTATTGGAAACAATAATCAAACTATAAATGTACAGACACTTGCAGAGTTGGTATCAACTGAAGATAACTACGGAGCTAGACTTTTCGTGTGCTTATTAGCACATCTCTTGGAGGAAGAAGGCCAGGAACATGACATAATATGTGTTCTGAATGTCATGGCAACTATGGTTCATGTCTGTCCAGCTGCTTGTGAACAATTATCTTTGCATGGAATAGCGAAAACAATCAGGACTTGGTGTCATTTGAGTAATACCTTCTCGAAAACAACTTATACGTGCATCTTAATTTTGGTTTTTAACACTTTGGGTTCAGTGCATCCTGAAACACTATCTGCCGATCAAATTTGGGTTGCAGTAACTATGAAGATGATGGAGTATTCAATTCCATCCAAAAAGGTTGATATCTTAAGTGAAGAAAGTCTCTTCGTTATTGGCATTATTTCCTTAATTTTGCATCGTTCCACCACTAAAGCACTTGAAGAGACTTCAAAGGCCATTCTTTTTAATACTTGTATAATCTCTATGGTCAACACCGTAGTCTGTGCTTCTTCTTCGAAGGGACCTGCTTTGGTTGACCACGATGAGGGAACAAGCACCGGAGAAACTTTAATATTTGTTCTTTTGCTTCATTACTTCGCCGTTAAAAGCTTGCATGCTATCCTACCAGAGTTTGTGGATTGGCAAAACTTCCTTGTTTCAACGAATCCATCGGAGCCGCTAGCCTTCATTGGCATCCGTTGCCATGACCTGTGCAGACTTCTGCATTTTGGTTCTCCTGTAATCAAGATTGTTGCTTCGTATAGCCTGTTAGAGTTATTTAACAGAATATCAGACCAAATAAACAGTAATAATGAAGAGTTGAAATGTACTATTGGGTACTTAATGTCCACAAGGAGTATATTGGAAGGTTTGGTTTTCTATAATGATCTGAGAGTGGCAACAAATTGCTCCCTCTGCTTGACAATGCTACTGGGATGGGAAAAGCTGAGAAAGGAAACAAATCTATTAGATGAGAGTAGCTGGTGTAGATTGATTATAGAGGAGATGACTGTATCTTTGGCAGCTCCTGCTTTAGCATCACAATCATTCTTGAACAGTCAAAGGCCTGCAGTACTTATAGCTATTGCGTTGTTGAAACTGCGTAAAAGCCCACAGTGGATGAGATCTGTGTTTGATAATTCAAGCATATCTGGCATGCTGGAGAACCTTACTGCTAGTGACTTGAGCTCGGAGATTTTGATTTTATTTCGAGAACTACTGAAATCTAACTTCTTAAGTACAGAGCAAATTGCAACTATAAATCAAATGCTCCAGGAATGCAGGAAGCGTGTGTACTCTAACAATGCTCAAGAGGGTCTTCCAAATGAGCCGATAAAGAAAGTCCTCAGCGCATCGTATGATATGGGGGACATTTTTGTAGGTAGCTTTCGTGTTTATCTAATCCATTGGAGGCTTGGATCCGGCATCTAA 3804 0.4148 MYWCSDVDDVDDDGFSCSQGHRSSLNLQTHEGASICLVCFSNLLSNPLSPTVHVSYALSMLSRSLSIPLFLQSLLKFHPHFLVSPLVAALSSFHDEPIAAQLTHLVLALSASADPSVCREFVARVSDRVSSGALGWTSPQLHMLHCLGALLNCEKDNDLHAHIKDMCSLISVLVTGLHLPSEEIRGEVLFVLYKLSVLQSTSAEGDGSDMLIPFCPQILYLLVDVLMKTQNDDVRLNCIALLTMLARRHLLREECAYDTSNMSSYEGFNSKETEEGTKGTSLVNLFAEAIKGPLLSSDSKVQIGALDLLFHYLSSVSTSGYQIRVLVEENIADYLFEILRLSEYKDPAVKMCLQVLGHLSTAEETFKLRLVVGISTLIPALRYVAEVPFHPVQCETLKLIYECISGCPGSVSTSQLEELIQVLIRMLRKHSDGDMGMIPETFIMVCSVFVALIRSPSCNGALDLSKPIEEATTHAILACLSVSERNINQILQCLYLLKEAYAYSHDGNSINSSKLELRSGILDLCRSHLLPWLVLGINEMEEDIALGLLETFHSILLLHSSTNTTEFAETLISSGWFSFSYECLGLFTGDSMKNRIYLLLSSLMDSLLQDDSGQPIREAALHLPRDPIDLLFLLGQRSTNSLDLPSCQYAVLLIMYSSSLYDERLADEKLILASLEQYILLNRVDFLNQTTNNLIVTRLVNLYSLLRGLGNMSYQIHYSREAEEIIFQFINNDEWDLLSARIHKVSLKWLFQQENIVNSLCHQILKFCRSYNLEEADIVIGNNNQTINVQTLAELVSTEDNYGARLFVCLLAHLLEEEGQEHDIICVLNVMATMVHVCPAACEQLSLHGIAKTIRTWCHLSNTFSKTTYTCILILVFNTLGSVHPETLSADQIWVAVTMKMMEYSIPSKKVDILSEESLFVIGIISLILHRSTTKALEETSKAILFNTCIISMVNTVVCASSSKGPALVDHDEGTSTGETLIFVLLLHYFAVKSLHAILPEFVDWQNFLVSTNPSEPLAFIGIRCHDLCRLLHFGSPVIKIVASYSLLELFNRISDQINSNNEELKCTIGYLMSTRSILEGLVFYNDLRVATNCSLCLTMLLGWEKLRKETNLLDESSWCRLIIEEMTVSLAAPALASQSFLNSQRPAVLIAIALLKLRKSPQWMRSVFDNSSISGMLENLTASDLSSEILILFRELLKSNFLSTEQIATINQMLQECRKRVYSNNAQEGLPNEPIKKVLSASYDMGDIFVGSFRVYLIHWRLGSGI 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00058 1267 PANTHER PROTEIN PRD1 15 1249 IPR044968 GO:0042138
Cca01g00058 1267 SUPERFAMILY ARM repeat 138 430 IPR016024 -
Cca01g00058 1267 SUPERFAMILY ARM repeat 296 621 IPR016024 -
Cca01g00058 1267 Gene3D - 37 370 IPR011989 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00058 K25318 - gmx:100784718 2177.9