Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00057 ATGTCGAATGCAGTCACTCACAGTCACAGTCAATTTGTGTTGGTGCTGCAGAACCCCAATTTCACGGGGAGCAAAAGCAGCAGCAACAGCTTCTTCCTAAAACCCTTTGCGAAATTCACATCCCTCACATCTCAAATTTGCCACGCTTCTTTCTACCCGTTACCATCATTCGCTGACACAGTTTCAGACTCAAAGCACACAACCCTTCTCGTTGAAACTTACCATCTCCACGACAGCCTCAGAACCTTACTTGCAAAGATTGAGGAGGAAGATTCGCATCCTCTCCACATACTCTCCGAAGATGGAAATTGGTCCAAAGACCATTTTTGGGCCGTTGTCAGGTTCCTTAAAAATGCCTCAAGGTTCACCGAAATCCTTCAGGTGTTTGATATGTGGACGAACATCGAGAAATCGCGGATTAGTGAGTTCAACTATAACAAGATCATAGGCTTGTTATGTGAAGAAGGAATGATGGAAGACGCGTTATCTGCATTGCAGGAGATGAAAGTTCAAGGTCTCAAGCCTTCGTTGGACACTTACAATCCAATAGTTCATGGACTATCCAGAGAAGGTAAATTCAGTGATGCTTTGCGTTTTTTTGATGAGATGAAAGAATCTGGCATAGAACCGGATAGTGAAACCTATGATGGTTTGATTGGAGCCTATGGGAAATTTCAAATGTACGATGAGATGGGCGAGTGTGTGAAAAAGATGGAGTTAGAAGGGTGCTCTCCCGATCATATCACTTATAATATACTTATCCAAGAGTATGCTCGTGGGGGGCTACTCCAGAGAATGGAAAAGCTGTATCAGAGAATGCATTCAAAAAGAATGCATTTGCAATCTTCTACTCTAGTTGTAATGCTGGAGGCTTATACCACATTTGGGATGGTTGAAAAGATGGAAAAGTTTTACAGAAAAGTCTTGTACTCAAAGACGTGTCTAGAGGATGAATTGATTAGAAAAATAGCTGAAGTTTATATCAAGAACTACATGTTTTCTAGATTAGAGGACCTGGGACTGGATTTATGTTCCGCATTTGGTGAGAGTGACCTTGTATGGTGTCTCCGTGTACTTTCTTATGCATGCGTTTTGAGTAAAAAGGGTATGGATATAGTTGTTCAAGAAATGCGAGATGCCAAGGTTAATTGGAATGTTACCGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGATTTCAGGCATTTGAGAATTTTGCTCTCTCAATTGCCGATCTATCGGGTGCAGCCTGATATAGTCACTATTGGAATTCTATTTGATGCCAATAGAATTGGTTTTGATGGCAGTGGAGCGTTAGAAACGTGGAGAAGAATGGGCTATCTACACAGAGTAGTAGAAATGAAGACAGATTCTCTGGTCCTTTCTGCATTTGGGAAAGGTCATTTTCTTAAAAGCTGTGTAGAAGTGTACTCTTCCCTTCACCCTGAAGACAGAAAAAGGGAAACATGGACTTACTATGATCTCATTGCTTTATTGACAAAGCATACTGGTAGCATCGACTGTATAAAACCAAGATAG 1545 0.4104 MSNAVTHSHSQFVLVLQNPNFTGSKSSSNSFFLKPFAKFTSLTSQICHASFYPLPSFADTVSDSKHTTLLVETYHLHDSLRTLLAKIEEEDSHPLHILSEDGNWSKDHFWAVVRFLKNASRFTEILQVFDMWTNIEKSRISEFNYNKIIGLLCEEGMMEDALSALQEMKVQGLKPSLDTYNPIVHGLSREGKFSDALRFFDEMKESGIEPDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILIQEYARGGLLQRMEKLYQRMHSKRMHLQSSTLVVMLEAYTTFGMVEKMEKFYRKVLYSKTCLEDELIRKIAEVYIKNYMFSRLEDLGLDLCSAFGESDLVWCLRVLSYACVLSKKGMDIVVQEMRDAKVNWNVTVANIIMLAYVKMKDFRHLRILLSQLPIYRVQPDIVTIGILFDANRIGFDGSGALETWRRMGYLHRVVEMKTDSLVLSAFGKGHFLKSCVEVYSSLHPEDRKRETWTYYDLIALLTKHTGSIDCIKPR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00057 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Cca01g00057 514 Pfam PPR repeat family 179 222 IPR002885 -
Cca01g00057 514 Pfam PPR repeat 145 172 IPR002885 -
Cca01g00057 514 Pfam PPR repeat 242 273 IPR002885 -
Cca01g00057 514 Gene3D Tetratricopeptide repeat domain 88 228 IPR011990 GO:0005515
Cca01g00057 514 Gene3D Tetratricopeptide repeat domain 341 509 IPR011990 GO:0005515
Cca01g00057 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 21 506 - -
Cca01g00057 514 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 21 506 - -
Cca01g00057 514 TIGRFAM PPR: pentatricopeptide repeat domain 145 176 IPR002885 -
Cca01g00057 514 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Cca01g00057 514 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Cca01g00057 514 TIGRFAM PPR: pentatricopeptide repeat domain 248 278 IPR002885 -
Cca01g00057 514 Gene3D Tetratricopeptide repeat domain 229 310 IPR011990 GO:0005515
Cca01g00057 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Cca01g00057 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cca01g00057 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00057 71 447 Glycosyltransferase AT1G05670 21.636 6.22e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00057 - - gmx:100808924 884.019