Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00055 ATGGCTTCTACTCGCAACGAGTTTTATGCACTTGTGCTGCTTTGCTCCATGGTGGCTACATGTGCTGCTAACTTCAACCAAGATTTTGATCTAACATGGGGTGATCATCGTGCTAAGATATTCAATGGAGGCCAGCTTCTCTCTCTTTCACTTGACAAAATCTCTGGCTCTGGCTTTCAATCCAAGAAAGAGTACCTATTTGGGAGGATCGATATGCAGCTCAAGCTTGTTGCTGGAAACTCTGCTGGCACTGTCACTGCTTACTACTTGTCATCTCAAGGGCCAACACATGACGAAATTGATTTTGAATTCTTGGGAAACGTGAGTGGTGACCCCTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAATTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATTATATTCTTGGTGGACAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTATGGGTGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTACTCTAGTCTGTGGAACGCTGATGACTGGGCCACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAAGCACCCTTCACAGCGTACTACCGCAATTTCAAAGCCTCAGAGTTCTCTGTGTCATCGAATTCGTTCTCTGATGGTGCATGGCAGAGCAACGAACTTGATGCATATGGCAGAAGAAGACTAAGATGGGTTCAGAGGTACTTCATGATCTACAACTACTGCAACGACCTTAAGCGATTCCCACAAGGCCTTCCCGCTGAGTGCAGGCGCTGA 828 0.4674 MASTRNEFYALVLLCSMVATCAANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKISGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETMGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKASEFSVSSNSFSDGAWQSNELDAYGRRRLRWVQRYFMIYNYCNDLKRFPQGLPAECRR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00055 275 Pfam Glycosyl hydrolases family 16 26 206 IPR000757 GO:0004553|GO:0005975
Cca01g00055 275 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 231 273 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca01g00055 275 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Cca01g00055 275 PIRSF EndGlu_transf 2 275 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca01g00055 275 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 275 IPR044791 GO:0004553
Cca01g00055 275 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 10 275 - -
Cca01g00055 275 CDD GH16_XET 22 273 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca01g00055 275 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Cca01g00055 275 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Cca01g00055 275 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Cca01g00055 275 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 274 IPR013320 -
Cca01g00055 275 Gene3D - 10 275 - -
Cca01g00055 275 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00055 Cca-Chr1 583908 585643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00055 12 275 Glycoside Hydrolase AT3G23730 75.362 3.62e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00055 K08235 - gmx:100499905 533.872