Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00051 ATGCCATTGCAAATGGTGTCTTTCTGCCCTGTGATCTCTCATTCCTTCAACTGCATTCCTCTTCCAACTCCAAACACTTCACATTCTGTTCGCCGCAACAACCCTCTTCCATGTCAGTGTCCACTCTCGCTCCACACTTCTTCACATTCCCTTAGTTTACCATGGGGGAGAGAGTCACCACGAAGCACCATAATACGAGCTTCAACTACAGATGTTTCGGTGGATGTAGCCGTAGAGGAAAAAGAAAAACGGATTCCCAAAGGAGAAACTTGGTCTGTCCACAAATTTGGTGGAACCTGTGTGGGAAACTCTTCCAGAATAAAGAATGTTGCGAACATAATTATTGACGATGATTCTGAAAGGAAATTGGTTGTGGTCTCTGCCATGTCAAAAGTGACGGATATGATGTATGATCTTATCTACAAGGCTCAATCCCGAGATGAGTCGTATGTTTCTGCACTTGATGCAGTTTTAGAGAAGCATAGCTCAACTGCAGAGGACCTACTTGCTGGAAAGGATCTTGCTTCTTTCTTATCACAGTTGCATCAAGACATCAGTGACCTCAAAGCCATGCTTCAAGCCATATACATAGCTGGTCATGCAACTGAATCCTTTACTGACTTTGTTGTGGGACATGGGGAGTTATGGTCTGCACAGATATTGTCTTTAGTGATTAAGAAAAATGGGATTGACAGCAAATGGATGGATGCAAGGGAGGTCCTTATTGTGAATCCTACTCGTTCTGATCAAGTTGACCCTGACTACTTGGAATCTGAACGAAGACTTGAGAAATGGTACTCTCTAAATCCATGTAAAGTAATTGTTGCCACGGGATTTATTGCAAGCACACCTCAGAACATTCCTACTACTCTCAAGAGAGATGGAAGTGACTTCTCGGCAGCAATTATGGGTGCTTTGTTTAGGGCTCGCCAGGTCACAATTTGGACAGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTGGTGATGCTGTGATTTTGAAGACATTGTCTTATCAAGAAGCATGGGAAATGTCTTATTTTGGTGCCAATGTCTTACATCCACGCACAATAGTCCCAGTTATTCGGTATGGCATACCCATTGTAATAAGGAATATTTTTAACCTCTCTGCTTCTGGAACAAAGATCTGCCATCCTCCTATTATTGGTGATGAAGATAGTCTAATATTAAAAAATTATGTCAAAGGCTTTACAACAATAGACAACTTGGCACTTGTAAATGTGGAGGGAACTGGAATGGCTGGTGTTCCAGGTACAGCCAGTGCTATTTTTAGTGCAGTAAAAGACGTTGCAGCTAATGTTATAATGATATCTCAGGCTAGTAGTGAGCATTCTGTGTGTTTTGCTGTGCCCGAGAAAGAAGTGCAAGCTGTTGCTGAGGCGTTGCAGTCTGTATTTCATGGCGCTTTGGATGCTGGTCGTCTTTCTCAGGTTGCAATAATTCCAAATTGTAGTGTTTTGGCCGCTGTCGGCCAGAAAATGGCAAGTACTCCAGGAGTTAGTGCCACCCTTTTCGATGCATTGGCTAAGGCCAGCATAAATGTCCGTGCTGTAGCACAAGGTTGTTCTGAGTACAACATAACAGTAGTTGTTAAGCGAGAGGATTCTATAAAGGCTTTACGGGCCGTTCATTCCAGATTTTATCTCTCAAAAACCACCATAGTAATGGGCATTATTGGACCTGGATTAATTGGAAGCACACTGCTTGACCAGCTAAGGGATCAGACTGCAAATCTGAAAGAAGAATTCAACATTGATTTGCGTGTAATGGGCATCATGGGTTCAAAGTTGATGCTCCTTGATGATGATGCGGGCATCGACTTAGATAAATGGAGAGAACTTAGAGAAGAAAAAGGAGAAGTGGCTAACTTGGAAAAATTTGTTCAACATGTGCATGGAAATCATTTTATACCAAACACCGTTTTAGTGGACTGCACAGCTGACTCCGTCATTGCAAGCAATTACGATGAGTGGCTGCGCAAAGGAATACATGTTGTCACCCCCAATAAGAAGGCAAATTCAGGACCACTTAATGAGTATTTGAGGATAAGAGCCCTTCAGAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGGGCTGGTCTTCCAATTATCAGCACTTTACGTGGTCTTCTTGAGACTGGTGACAGAATATTGCAAATTGAAGGTATCTTCAGTGGGACTTTGAGTTACATCTTTAATAACTTCAAAGATGGACGGGTTTTTAGTGAGGTAGTAGCTGAAGCAAGGGATGCAGGTTATACTGAGCCCGATCCAAGGGATGACCTGTCTGGAACTGATGTTGCTAGAAAGGTGATAATTCTTGCAAGGGAATCAGGTTTGAAGCTAGAGCTTTCTGATATTCCCGTTGAAAATCTTGTGCCAGAACCATTAAGAGCTAGTGCATCAGCTCAAGACTTCACGCAACAATTGCCAAAATTTGACCAGGAATTAACGGAGAAATTACAAGATTCGGAGAATGCTGGGGAAGTGTTGAGATACGTGGGAGTGGTGGACGTGACTAACCAAAAAGGAGTGGTAGAGCTGAGAAGATACAAGAAGGATCATCCATTTGCACAACTATCTGGATCAGATAATATTATTGCGTTCACAACAAGAAGATACAGAAATCAGCCTCTCATAGTTCGTGGACCTGGAGCTGGTGCCCAAGTAACAGCTGGCGGAATATTCAGTGACATTTTACGACTTGCATCATATCTTGGTGCTCCATCATAG 2766 0.4262 MPLQMVSFCPVISHSFNCIPLPTPNTSHSVRRNNPLPCQCPLSLHTSSHSLSLPWGRESPRSTIIRASTTDVSVDVAVEEKEKRIPKGETWSVHKFGGTCVGNSSRIKNVANIIIDDDSERKLVVVSAMSKVTDMMYDLIYKAQSRDESYVSALDAVLEKHSSTAEDLLAGKDLASFLSQLHQDISDLKAMLQAIYIAGHATESFTDFVVGHGELWSAQILSLVIKKNGIDSKWMDAREVLIVNPTRSDQVDPDYLESERRLEKWYSLNPCKVIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVGDAVILKTLSYQEAWEMSYFGANVLHPRTIVPVIRYGIPIVIRNIFNLSASGTKICHPPIIGDEDSLILKNYVKGFTTIDNLALVNVEGTGMAGVPGTASAIFSAVKDVAANVIMISQASSEHSVCFAVPEKEVQAVAEALQSVFHGALDAGRLSQVAIIPNCSVLAAVGQKMASTPGVSATLFDALAKASINVRAVAQGCSEYNITVVVKREDSIKALRAVHSRFYLSKTTIVMGIIGPGLIGSTLLDQLRDQTANLKEEFNIDLRVMGIMGSKLMLLDDDAGIDLDKWRELREEKGEVANLEKFVQHVHGNHFIPNTVLVDCTADSVIASNYDEWLRKGIHVVTPNKKANSGPLNEYLRIRALQRQSYTHYFYEATVGAGLPIISTLRGLLETGDRILQIEGIFSGTLSYIFNNFKDGRVFSEVVAEARDAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEPLRASASAQDFTQQLPKFDQELTEKLQDSENAGEVLRYVGVVDVTNQKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYRNQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00051 921 Pfam Homoserine dehydrogenase 713 911 IPR001342 GO:0006520
Cca01g00051 921 PANTHER - 22 921 IPR011147 GO:0004072|GO:0004412|GO:0009067
Cca01g00051 921 TIGRFAM asp_kinases: aspartate kinase 91 555 IPR001341 GO:0004072|GO:0008652
Cca01g00051 921 CDD ACT_AKi-HSDH-ThrA-like_1 411 490 - -
Cca01g00051 921 ProSiteProfiles ACT domain profile. 497 574 IPR002912 -
Cca01g00051 921 Pfam Homoserine dehydrogenase, NAD binding domain 568 705 IPR005106 GO:0016491|GO:0050661
Cca01g00051 921 Pfam ACT domain 420 474 IPR002912 -
Cca01g00051 921 ProSitePatterns Homoserine dehydrogenase signature. 759 781 IPR019811 GO:0006520
Cca01g00051 921 CDD ACT_AKi-HSDH-ThrA_2 492 557 - -
Cca01g00051 921 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 713 898 - -
Cca01g00051 921 SUPERFAMILY ACT-like 400 475 IPR045865 -
Cca01g00051 921 SUPERFAMILY Carbamate kinase-like 92 386 IPR036393 -
Cca01g00051 921 PANTHER ASPARTOKINASE-HOMOSERINE DEHYDROGENASE 22 921 - -
Cca01g00051 921 ProSitePatterns Aspartokinase signature. 93 101 IPR018042 GO:0004072|GO:0008652
Cca01g00051 921 Gene3D - 398 557 - -
Cca01g00051 921 CDD AAK_AK-HSDH 91 385 IPR041743 -
Cca01g00051 921 Gene3D - 91 386 IPR036393 -
Cca01g00051 921 Gene3D Dihydrodipicolinate Reductase; domain 2 724 895 - -
Cca01g00051 921 Gene3D - 564 913 - -
Cca01g00051 921 Pfam ACT domain 490 553 IPR027795 -
Cca01g00051 921 Pfam Amino acid kinase family 92 373 IPR001048 -
Cca01g00051 921 SUPERFAMILY ACT-like 482 571 IPR045865 -
Cca01g00051 921 ProSiteProfiles ACT domain profile. 416 485 IPR002912 -
Cca01g00051 921 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 560 735 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00051 Cca-Chr1 527324 536431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00051 K12524 - gmx:100812202 1489.17