Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00050 ATGTCTGCAATTCCTATCAGCTCCGCCTATGCTTCCACCTTCTCTTATTCCGCGCGCGCGCTTTGCTTCTTCTCTGCTCGCAACAACATCAACAGGATCACTCTTCACCGACCTGTGTTTTGTCAATTTGAATCCAAGACAGAGGAAGCGCTGACAAGAAGGTGCTCCCCCTTTCTAGAGAGTTCATTACTCTCTGGTAGCGGTGCTGTGGCCTCCGACGAGTGGAAAGCTGTTCCTGATATTTGGAGATCTTCTGCGGAGAAGTATGGTGATAAAGTAGCATTAGTAGATCCGTATCATGATCCTCCTTCGATTATGACATATAAACAGTTGGAGGATGCAATATTGGACTTTGCTGAAGGGTTGAGAGTTATTGGAGTAAGACCCAATGAGAAACTTGCACTTTTTGCTGATAATTCATGTCGCTGGCTTGTAGCAGATCAAGGTATGATGGCATGTGGGGCAATCAATGTGGTAAGGGGTTCGAGGTCATCAATTGAAGAATTGCTGCAAATATACAACCACTCTGAGAGTGTTGCACTAGCTGTGGACAATCCTGAAATGTTTAATCGGATTGCAAAAGTGTTGTATTTGAAGGCTTCTATAAGATTTATTATACTGCTATGGGGAGAAAAATCAAGCCTGGTCAGTAAAGGAGACAAGGGGGTGCCTGTCTTTACTTTCACAGAAGTCATACATTTGGGACAAGAGAGTCGTAGAGTATTGTTTAATTCTCTTGATAATAGGAAGCACTATATGTATGAAGCAATCAAATCTGATGACATTGCTACTCTTGTATACACAAGTGGAACTACTGGAAATCCAAAGGGTGTTATGCTAACCCATCAGAATCTTTTGCATCAGATAAAAAACTTGGGGGATATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGCATGCTGCCTTCCTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCGTGCGGTGTTGAACAAGTATACACAACTGTGAGAAACTTGAAGGATGATTTGGGTCTTTACCAACCACATTACTTGATTTCTGTTCCTTTAGTCTATGAAACGTTATACAATGGGATTCAGAAGCAGATATCTACAAGCTCCTTTGTTAGAAAGCTTGTTGCACTCACATTCATAAGGGTCAGCATAAGGTACATGGAGTGTAAGCGGATTTATGAGGGTAAATGTCTAACAAAGAATCAGAAGCCGCCTTCCTATCTCCATTCAATCTTGGACTGGTTATGGGCAAGAGTCATGGCCACAATATTATTTCCTGTTCATTTGCTGGCGAAGAAACTGGTCTACAGTAAAATTCATTCAGCTATTGGGATGTCAAAGGCAGGAATAAGTGGTGGTGGTAGCTTATCTTCTCATGTTGATAAATTTTTTGAGGCTATTGGTGTGAATGTACAGAATGGATATGGTTTAACAGAAACTTCACCAGTTATTGCTGCTCGACAGCTTAGTTGTAATGTTATTGGGTCTGTTGGGCATCCAATTAAGCATACAGAATTCAAAGTCATTGATTCTGAGACTGACGAAGTTCTTCCACCTGGTTCAAAGGGTATTTTGAAAGTCAGGGGCCCACAATTGATGAAGGGATACTACAAGAATCCTTCAGCTACAAACCATGTCTTGGATAGGGATGGCTGGCTGAATACTGGGGATATTGGTTGGATTGTTCCTCACCATTCAACTGGGCGGAGTCGTAATTCCAGTGGAGTAATTGTTGTGGAAGGCCGTGCTAAAGACACTATTGTGCTTTCTACAGGTGAAAATGTTGAACCGGGAGAACTTGAAGAAGCTGCCATGAGGAGTAGCCTCATACATCAAATTGTTGTTATTGGCCAGGATAAGCGACGTCTAGGAGCTGTAATTGTTCCTAACAAAGAAGAAGTCTTAAAGGCAGCAAGGGAATCGTCAATTATAGATTCCAACAGTTCAGATGTCAGTCAGGAAAAAGTGACCAGCCTAATATATAAAGAATTGAGGACATGGACGTCAGAGTCTCCATTTCAAATTGGGCCAATCCTTCTCGTAAATGATCCCTTCACGATTGATAATGGGCTAATGACACCCACGATGAAAATTCGAAGGGAAAAAGTTGTGTCTCAATACGGGGACCAAATAGAGAATCTGTACAAGTAA 2157 0.4172 MSAIPISSAYASTFSYSARALCFFSARNNINRITLHRPVFCQFESKTEEALTRRCSPFLESSLLSGSGAVASDEWKAVPDIWRSSAEKYGDKVALVDPYHDPPSIMTYKQLEDAILDFAEGLRVIGVRPNEKLALFADNSCRWLVADQGMMACGAINVVRGSRSSIEELLQIYNHSESVALAVDNPEMFNRIAKVLYLKASIRFIILLWGEKSSLVSKGDKGVPVFTFTEVIHLGQESRRVLFNSLDNRKHYMYEAIKSDDIATLVYTSGTTGNPKGVMLTHQNLLHQIKNLGDIVPAEVGDRFLSMLPSWHAYERACEYFIFSCGVEQVYTTVRNLKDDLGLYQPHYLISVPLVYETLYNGIQKQISTSSFVRKLVALTFIRVSIRYMECKRIYEGKCLTKNQKPPSYLHSILDWLWARVMATILFPVHLLAKKLVYSKIHSAIGMSKAGISGGGSLSSHVDKFFEAIGVNVQNGYGLTETSPVIAARQLSCNVIGSVGHPIKHTEFKVIDSETDEVLPPGSKGILKVRGPQLMKGYYKNPSATNHVLDRDGWLNTGDIGWIVPHHSTGRSRNSSGVIVVEGRAKDTIVLSTGENVEPGELEEAAMRSSLIHQIVVIGQDKRRLGAVIVPNKEEVLKAARESSIIDSNSSDVSQEKVTSLIYKELRTWTSESPFQIGPILLVNDPFTIDNGLMTPTMKIRREKVVSQYGDQIENLYK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00050 718 PANTHER LONG-CHAIN-FATTY-ACID COA LIGASE (AMP-FORMING) 2 718 - -
Cca01g00050 718 Pfam AMP-binding enzyme 84 591 IPR000873 -
Cca01g00050 718 Gene3D - 73 385 IPR042099 -
Cca01g00050 718 ProSitePatterns Putative AMP-binding domain signature. 265 276 IPR020845 -
Cca01g00050 718 Gene3D - 448 492 - -
Cca01g00050 718 Gene3D Luciferase; Domain 3 493 563 - -
Cca01g00050 718 Gene3D - 586 713 IPR045851 -
Cca01g00050 718 PANTHER ACYL-ACTIVATING ENZYME 16, CHLOROPLASTIC-RELATED 2 718 - -
Cca01g00050 718 SUPERFAMILY Acetyl-CoA synthetase-like 75 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00050 Cca-Chr1 505352 515720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00050 34 718 Acyl Lipid Metabolism Gene Families AT3G23790 70.408 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00050 K01897 - gmx:100782583 1326.61