Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00049 ATGTCTTTCCATGCACTTCAATCTCAGCTATGCTCCGTGGCGCGGCAGAGCCCATCTCTGGCGAAGAAGGTTCACGCACACATCATAAAAGCGGGTCTCACCCACCACGAACCCATCCCCAACACTCTCTTAGACGCATACGGCAAATGCGGTCTCATCGAACACGCACTCCAACTGTTCGACGCATTGCCCCACCGAGACCCCGTCGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCTCCAACCGCCCCCACCACGCCCTCTCCGCCTCACGCTCCCTTCTCGCCGCCGGCCACCTTCCCGACCACTTCGTCTTCTCCTCCCTCGTCAAGGCTTGCGCCAACTTGGGTGCCCTTCACGTGAAACAAGGGAAACAGGTGCATGCTCGCTTCTTCCTCTCACCCTTCTCCGATGACGACGTTGTCAAGTCATCGTTGGTTGACATGTATTCGAAATTCGGGTTGCCCGATTATGGGCGTGCCGTCTTCGACTCCATTTCTTCCTTGAATTCGATTTCTTGGACTGCCATGATATCTGGGTATGCACGGAGTGGGCGAAAGTGTGAGGCTTTTCAGCTGTTTCGTCAAACGCCGTACAAGAATTTGTTTGCTTGGACTGCTTTGGTTTCTGGGTTGGTGCAAAGTGGGAATGGAGTTGAGGCCCTCCACTTGTTTGTTGAAATGCGGCACGAAGGGGTTAGTGTGACAGACCCGTTGGTTCTTTCCAGTGTGGTTGGTGCTTGTGCTAATTTAGCTCTTTGGGAGCTAGGGAAACAGATGCACGGTGTGGTTATAACCCTTGGGTACGAGTCTTGCTTGTTCATAAGCAATGCGCTTATTGATATGTATGCCAAATGTAGTGACCTTGTTGCTGCAAAGTATATTTTCTGTGGAATGTGCAGAAAGGATGTGGTTTCTTGGACTTCGATAATTGTTGGCACTGCCCAGCATGGGCAGGCTGAGGAGGCATTGACTTTGTATGATGGCATGGTTTTGGCTGGGGTTAAGCCAAATGAGGTGACCTTTGTTGGGTTGATGCATGCTTGTAGTCACGCTGGCCTTGTTAGTAAGGGCAGGGCTTTGTTCAGGTCTATGTTTGAAGATTATGGAATTAAGCCCTCTCTGCAGCACTATACTTGTTTGCTTGATCTTTTTAGTCGATCAGGGCACCTTGATGAGGCTGAGAATCTCATTAGGACAATGCCATTCAACCCTGATGAACCTACTTGGGCTGCTTTGCTCAGTGCTTGTAAGCGCCATGGTGACACGCAGATGGCAGTTAGAATCGCTGATCATTTGTTGAATTTAAAACCTGAAGATCCTTCTTCTTTTATATTGTTATCTAACATATATGCTGGAGCTGGTATGTGGGAGAATGTTTCGAAAGTGAGAAAGTTGATGGCGGTCATGGAAGTTAAAAAGGAACCAGGGTATAGCTGCATTGACTTGGGGAAGGAAGGCCATGTGTTTTATGCTGGAGAGACTTCCCACCCAATGAAGGATGAGATTATAGGTTTAATGAGGGAGTTAGATGCTGAGATGAGGAAAAGGGGTTATGCTCCTGATACTAGCTCGGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTGGCTTATGGGCTTCTTAAGGCGGTTCCAGGGACTATTATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCATACTGTTCTGAAACTCATCAGCACTATAACAAATAGGGAAATTTATGTCCGAGATGCCAAAAGATATCACCACTTTAAGGATGGGAATTGTTCGTGTAATGACTTCTGGTGA 1833 0.4806 MSFHALQSQLCSVARQSPSLAKKVHAHIIKAGLTHHEPIPNTLLDAYGKCGLIEHALQLFDALPHRDPVAWASLLTACNLSNRPHHALSASRSLLAAGHLPDHFVFSSLVKACANLGALHVKQGKQVHARFFLSPFSDDDVVKSSLVDMYSKFGLPDYGRAVFDSISSLNSISWTAMISGYARSGRKCEAFQLFRQTPYKNLFAWTALVSGLVQSGNGVEALHLFVEMRHEGVSVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCGMCRKDVVSWTSIIVGTAQHGQAEEALTLYDGMVLAGVKPNEVTFVGLMHACSHAGLVSKGRALFRSMFEDYGIKPSLQHYTCLLDLFSRSGHLDEAENLIRTMPFNPDEPTWAALLSACKRHGDTQMAVRIADHLLNLKPEDPSSFILLSNIYAGAGMWENVSKVRKLMAVMEVKKEPGYSCIDLGKEGHVFYAGETSHPMKDEIIGLMRELDAEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISTITNREIYVRDAKRYHHFKDGNCSCNDFW 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00049 610 Gene3D Tetratricopeptide repeat domain 126 253 IPR011990 GO:0005515
Cca01g00049 610 TIGRFAM PPR: pentatricopeptide repeat domain 41 62 IPR002885 -
Cca01g00049 610 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Cca01g00049 610 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Cca01g00049 610 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Cca01g00049 610 Pfam PPR repeat 378 401 IPR002885 -
Cca01g00049 610 Pfam PPR repeat 41 62 IPR002885 -
Cca01g00049 610 Pfam PPR repeat 204 233 IPR002885 -
Cca01g00049 610 Pfam PPR repeat 172 196 IPR002885 -
Cca01g00049 610 PANTHER OS11G0661000 PROTEIN 11 598 - -
Cca01g00049 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 373 IPR002885 -
Cca01g00049 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Cca01g00049 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Cca01g00049 610 Pfam PPR repeat family 302 350 IPR002885 -
Cca01g00049 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Cca01g00049 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Cca01g00049 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Cca01g00049 610 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 598 - -
Cca01g00049 610 Gene3D Tetratricopeptide repeat domain 322 499 IPR011990 GO:0005515
Cca01g00049 610 Gene3D Tetratricopeptide repeat domain 2 125 IPR011990 GO:0005515
Cca01g00049 610 Pfam E motif 420 481 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00049 Cca-Chr1 500020 502001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00049 16 610 Glycoside Hydrolase AT3G49170 37.397 3.50e-134 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00049 - - gmx:100782048 1117.45