Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00048 atgagTAACGGGCATGGATGCTGCAAATCAGGGCCAGGCTATGCTTCCCCACTGGAAGCCATGTCTGGTCCCAGAGAGTCTCTCATTTATGTCACCGCCGTCTACGCAGGCACCGGAATAGAGAAGCCTGACTATTTGGCCACAGTGGACGTAGATCCAAACTCTCCAACTTATTCCAAAGTAATCCATAGGCTACCTGTTCCGTATTTGGGTGATGAATTGCATCACACTGGCTGGAATTCATGCAGCTCTTGCCATGGGGACCCATCAGCAGAGCGACGATTTCTGATCGTGCCTGCACTCGTATCAGGTCGCGTATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCTTTGCACAAAGTTGTTGAGCCTGCGGATATCGAACAGAAGACTGGGTTAGCTTATCCACACACATCGCACTGCCTTGCTTCTGGTGACATAATGATCTCGTGTCTTGGAGATAAAGATGGAAGTGCTGCAGGCAACGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAAGGAAGGTGGGAGAAACCAGGGCACAGTCCACTATTTGGGTATGACTTTTGGTACCAGCCACGCCACAATACTATGATTAGCACATCATGGGGTGCTCCTAGTGCTTTTACGAAGGGTTTTAACTTACAGCATGTCTCTGATGGATTATACGGAAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACACTGGACCTTGGTGATTCAGGACTGTTACCCTTAGAGATAAGGTTCTTACATGATCCTGCTAAAGATACAGGCTTTGTTGGGAGTGCATTGACAAGTAACATGATACGGTTTTTTAAGACCCAAGATGGATCATGGGGCCATGAGGTTTCCATATCAGTGAAACCACTGAAAGTGCAAAACTGGATTCTTCCTGAAATGCCTGGGCTTATAACTGATTTTCTGATTTCTCTGGATGATCGGTTTTTGTACTTTGTAAACTGGCTTCACGGGGATATAAGACAGTATAACATTGAGGACCTTAAAAATCCTAAACTGACTGGACAAGTATGGGTTGGTGGACTTCTCCAGAAAGGAAGTCCTATAGTAGCTATAACAGATGATGGTGAAACATGGCAACCAGAAGTGCCAGAGATTCAGGGGAAAAAGTTGAGAGGGGGACCTCAGATGATTCAATTGAGTTTAGATGGGAAGAGGCTGTATGCTACCAACTCATTATTTAGCACATGGGACAAGCAATTTTATCCTGATCTTGTCCAGAAAGGCTCCCACATACTACAGATTGATGTTGATACTGAGAAGGGTGGCCTGAAAATCAACCCCAACTTCTTTGTGGACTTTGGAGCTGAGCCAGATGGTCCTTCTCTTGCCCATGAGATGAGATATCCTGGTGGTGACTGTACTTCAGATATATGGGTTTAA 1428 0.4531 MSNGHGCCKSGPGYASPLEAMSGPRESLIYVTAVYAGTGIEKPDYLATVDVDPNSPTYSKVIHRLPVPYLGDELHHTGWNSCSSCHGDPSAERRFLIVPALVSGRVYVVDVKTNPRAPSLHKVVEPADIEQKTGLAYPHTSHCLASGDIMISCLGDKDGSAAGNGFLLLDSEFNVKGRWEKPGHSPLFGYDFWYQPRHNTMISTSWGAPSAFTKGFNLQHVSDGLYGRHLHVYSWPGGELRQTLDLGDSGLLPLEIRFLHDPAKDTGFVGSALTSNMIRFFKTQDGSWGHEVSISVKPLKVQNWILPEMPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPKLTGQVWVGGLLQKGSPIVAITDDGETWQPEVPEIQGKKLRGGPQMIQLSLDGKRLYATNSLFSTWDKQFYPDLVQKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00048 475 PANTHER METHANETHIOL OXIDASE 4 475 IPR008826 GO:0008430
Cca01g00048 475 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 45 407 - -
Cca01g00048 475 PANTHER SELENIUM-BINDING PROTEIN 1 4 475 - -
Cca01g00048 475 Pfam 56kDa selenium binding protein (SBP56) 8 475 IPR008826 GO:0008430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00048 Cca-Chr1 483309 488200 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00048 K17285 - gmx:100794235 969.918