Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00042 ATGGCGTTGTTGGTGGAGAAAACGTCCAGTGGAAGGGAGTACAAGGTGAAGGACATGTCGCAGGCTGACTTCGGCCGCATGGAGCTCCAACTCGCAGAGGTCGAAATGCCGGGCCTCATGGCCTGCCGGACAGAGTACGGCCCATCGCAGCCCTTCAAGGGCGCCAGGATCACCGGCTCCCTCCACATGACCATCCAAACCGCCGTCCTCATCGAGACGCTCACAGCGCTCGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCCACGCAGGACCAcgccgccgccgccaccgcccgcgacagcgccgccgtcttcgccTGGAAGGGCGAGACGCTGCAGGAGTACTGGTGGGGCCCCGAGCGCGCCCTCGACTGGGGCCCCGGCGGCGGCCCCGACCTTATCGTGGACGACGGCGGCGACACCACGCTGCTGATCCACGAGGGCGTGAAGGCGGAGCAGGAGTTCGAGAAGAGCGGGAAACTCCCGGATCCGGCTTCCTCGGACAATGCGGAGTTCCAGATCGTGCTGACGCTGATCAAGGACGGGTTGAAGAGCGATCCGAAGAGGTACCACAAGATGAAGGAGAGACTGGTGGGAGTTTCGGAAGAAACCACCACCGGCGTGAAGAGGCTCTACCAGATGCAGGCCAATGGCTCCCTCTTGTTCCCCGCCATCAATGTCAATGACTCCGTCACCAAGAGCAAGTTTGATAACCTGTATGGATGCCGTCACTCGCTTCCCGATGGATTGATGAGAGCCACCGACGTGATGATTGCCGGAAAGGTTGCCGTTGTGTGCGGCTATGGAGATGTTGGCAAGGGTTGTGCTGCCGCCATGAAGCAGGCTGGGGCTCGTGTCATTGTCACTGAGATCGATCCCATTTGTGCCCTTCAGGCTCTCATGGAAGGTCTTCAGGTTCTCACCCTCGAGGAAACTCTCTCCGTCGCCGACATCTTCGTCACCACCACCGGTAACAAGGACATCATCATGCTCAACCACATGAAGCAAATGAAGAACAACGCCATTGTCTGCAACATTGGCCACTTCGACAACGAAATCGACATGCTGGGCCTGGAGACCCACCCTGGTGTGAAGCGCATCACTATCAAGCCTCAAACCGATCGATGGGTCTTCCCTGAGACCAAAACAGGGATCATTGTGCTGGCGGAGGGGCGTTTGATGAACTTGGGGTGTGCCACAGGCCACCCCAGCTTTGTCATGTCCTGCTCCTTCACCAACCAGGTCATTGCTCAGCTTGAACTGTGGAAGGAGAAGGGTTCTGGCAAGTATGAGAACAAGGTCTATGTTTTGCCCAAACACCTTGATGAGAAAGTCGCTTCTCTCCACCTTGGCAAGCTTGGAGCTAACCTCACCAAGCTTACCAAAGAGCAGGCAGATTACATCAGTGTGCCTGTCGAGGGTCCATACAAGCCTGCTCATTACAGATATTAA 1458 0.5528 MALLVEKTSSGREYKVKDMSQADFGRMELQLAEVEMPGLMACRTEYGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAATARDSAAVFAWKGETLQEYWWGPERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEQEFEKSGKLPDPASSDNAEFQIVLTLIKDGLKSDPKRYHKMKERLVGVSEETTTGVKRLYQMQANGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAAMKQAGARVIVTEIDPICALQALMEGLQVLTLEETLSVADIFVTTTGNKDIIMLNHMKQMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETKTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKGSGKYENKVYVLPKHLDEKVASLHLGKLGANLTKLTKEQADYISVPVEGPYKPAHYRY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00042 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Cca01g00042 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Cca01g00042 485 Gene3D - 243 404 - -
Cca01g00042 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Cca01g00042 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Cca01g00042 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Cca01g00042 485 CDD SAHH 23 473 IPR000043 -
Cca01g00042 485 Gene3D - 15 485 IPR042172 -
Cca01g00042 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Cca01g00042 485 SMART AdoHcyase_2 13 484 IPR000043 -
Cca01g00042 485 PIRSF SAHH 2 485 IPR000043 -
Cca01g00042 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Cca01g00042 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
Cca01g00042 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 379 485 - -
Cca01g00042 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Cca01g00042 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00042 Cca-Chr1 457271 459409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00042 K01251 - pvy:116136948 915.605