Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00041 ATGGAAGCAGTGAGGGAGTGGGGAAACAGGGCGTTGGCGAGTGTGGACCCAGAAATCCACGACCTCATTGAGAAGGAGAAGCGCCGTCAATGGCGTGGAATAGAGCTAATAGCCTCAGAGAATTTCACCTCCTTCGCCGTAATAGAGGCCTTGGGGAGTGCCCTCACCAACAAGTACTCCGAGGGCATGCCCGGTAACCGCTACTACGGCGGCAACGAGTTCATCGATCAGATCGAGAACCTCTGCCGTTCCCGCGCCCTCCAGGTCTTCCACCTCGACCCCGCCGCATGGGGCGTCAACGTCCAGCCTTACTCCGGCTCTCCGGCCAACTTCGCCGCCTACACGGCGGTCCTCCAGCCCCACGACCGCATCATGGGCCTGGATCTGCCCTCCGGCGGCCACCTCACCCACGGCTACTACACCTCCGGCGGGAAGAAGATATCGGCCACCTCCATTTACTTCGAGAGTCTTCCTTACAAAGTGAACTCCTCCACGGGATTCATCGACTACGAGAGGTTGGAGGAGAAGGCGTTGGATTTCAGGCCCAAACTTATAATCTGCGGTGGCAGTGCGTACCCTAGGGATTGGGACTATGCCAGGTTCAGACAGGTTGCTGATAAGTGCGGCGCTCTTTTGCTCTGTGACATGGCTCACATCAGTGGTCTCGTGGCAGCTCAGGAAGCTAATAATCCGTTTGAGTACTGTGACATTGTGACTACGACGACGCACAAGAGTCTGAGGGGGCCTAGGGCGGGTATGATCTTCTACCGGAAGGGGCCTAAGCCGCCGAAGAAGGGGCAGCCGGAGAATGCAGTTTATGATTTTGAGGATAAAATAAACTTTGCGGTGTTTCCTTCGCTTCAGGGGGGTCCTCACAATCACCAGATTGGGGCACTTGCGGTGGCACTGAAGCAGGCTCTGACGCCGGGATTCAAGGCGTATGCGAAGCAGGTTAAGGCCAATGCAGCTGCGCTTGGAAGCTACTTGATGAGCAAGGGGTACAGTCTTGTCACTGGAGGAACTGAGAATCATCTTGTCTTGTGGGATCTCCGTCCCCTTGGCCTGACCGGCAATAAGGTCGAGAAGCTTTGTGACCTCTGCCACATTACTGTCAACAAAAATGCTGTTTTTGGTGATAGCAGTGCCTTGGCCCCTGGAGGAGTACGGATTGGTGCCCCAGCCATGACTTCAAGGGGCTTGCTTGAGAAGGACTTTGAGCAGATCGGGGAGTTTCTTCACCGTGCAGTCACTCTCACACTGGAGATCCAGAAAGAGCATGGAAAACTTTTGAAGGATTTCAACAAAGGCCTAGTCAACAATAAAGCTATTGAAGATCTCAAAGCTGATGTTGAGAAATTTGCAGCTTCCTTCGATATGCCCGGTTTCCTAGTATCTGAGTTGAAGTACAAGGACTAG 1416 0.5403 MEAVREWGNRALASVDPEIHDLIEKEKRRQWRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQVFHLDPAAWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGFIDYERLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQALTPGFKAYAKQVKANAAALGSYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCHITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVNNKAIEDLKADVEKFAASFDMPGFLVSELKYKD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00041 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Cca01g00041 471 Gene3D - 41 316 IPR015421 GO:0003824
Cca01g00041 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca01g00041 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Cca01g00041 471 CDD SHMT 13 424 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca01g00041 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Cca01g00041 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Cca01g00041 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Cca01g00041 471 SUPERFAMILY PLP-dependent transferases 6 463 IPR015424 -
Cca01g00041 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00041 Cca-Chr1 451923 453499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00041 K00600 - gmx:100815417 882.863