Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00040 ATGAGTACCGTTGATAAAATGTTGATTAAGGGGATTCGGAGCTTCGACCCAGAGAATAAGAACGTCATCACCTTCTTTAAGCCATTAACCCTAATTGTCGGTCCTAATGGTGCTGGCAAAACCACGATCATAGAGTGTTTGAAACTTTCATGCACAGGTGAGTTGCCTCCTAACGCCAGGTCTGGCCACAGCTTCATTCACGACCCCAAGGTTGCAGGAGAAACCGAAACGAAGGGACAGATTAAGCTCCGATTTAAAACGGCCGCCGGCAAAGATGTCGTTTGCGTGAGGTCGTTTCAGCTGACGCAAAAGGCTTCGAAAATGGAATACAAGGCAATAGAGAGTGTGCTTCAAACTATTAATCCTCACACAGGCGAGAAAGTTTGCCTCAGCTATAGATGCGCTGACATGGATCGAGAGATTCCCGCGCTCATGGGCGTTTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCACCAAGACGAAGCCAACTGGCCACTCCAGGATCCTTCCACCTTGAAGAAGAAGTTCGACGATATTTTTTCGGCAACTCGTAGATACACCAAGGCACTGGAAGTTATAAAGAAACTTCACAAGGAGCAGGGTCACGAGATAAAGACTTATAAGCTGAAACTGGAAAATCTTCAGACTCTCAAAGATGCTGCTTACAAGCTTCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCTGTAAAATGTCAAGTGCAACAGTTGGATGGGAATATTAAAAAATTGGATGATAAAATTCGTCATGCGGAGAAAACAATTCAAGATTTGCGGAAGCTGCAAGAGCAGATATCAACAAAAACTGCTCAACGAAGCACTCTGTTTAAGGAACAACAGAAACAATATGCAGCTCTTCCCGAGGAGAATGAAGACACTGATGAGGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGAATTGCAATTTTAGAAGCAAAAGTAAAAAGGCTGGAAAGAGAGTGGACTGACACTGATGATAAAAGTTCCATCCTTCAGAAGACCATTCCTCATTTCATCCATGAGATTAGCAAGCTACAAAATGAAGCAGATGCTCACTTGTCTTTGAAGAATGAACGTGATTCCTCCATTCAGAGTCTTTTTGCTAGATATAATTTAGGATCTCTTCCAAAGTCACCATTCAGTGATGAGGTTGTTTTAAACCTCACTAATCGTGTAAAATTGAGGTTGGCAGATCTTGAGAAGGATCTGGGTGATAAAAAGAAAGCGAATGACAATGAACTCAATATGGCATGGGATTGCTACATGAATGCAAATGACCGTTGGAAAGATACTGAGGCTGAAAAAAAGGCTAAGACAGAGATCAAGAGTGGCATTTTGAAGCGAATTGAAGAGAAGAAAAATGAGCTTGATAAATCTGAACTTGAAATACCTAATTTAAACTTCTCTCATATAGATGAAAGAGAAAGAAATTTGGGAAAGGAGGTTGAGAGGAAGGCAAACCAACTTGATGAAAGACAATTTGAACCAAATATACGTCAGTTGCAAAATGAGATATATAGTGTAGATCAAAAGATTAAGGCTGTCAATCGAGAGAAGGAGGTCATGTCTTCTGATTCAGAGAACAGAGTTAAGATATCTTATaagaaggcagaattagaaaatcagaagaagaaacataaaaagatAATTGATGATCAAAAGGACAAAATAAGAAAGGTGCTGAAAGGGAGGGTCCCTCTTGACAAGGATGTGAAGAAGGAAGTTACACAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGATCTGAATGCCAAATACCGTGAAGCTGAGAAAGAAGTCAATATGTTGCAGATGAAAATACAAGAGGTTAATAATAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGAAGTCCAGAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTCATCATGTTTGTCCTTGCTGTGAGCGCTCCTTCTCTTCAGAAGAAGAAGACGATTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCTGAGCATATGAAAGTTCTCGCTGTGGAGTCCTCAAATGCAGAGTCTCATTATCAGCAGCTGGATAAGCTTCGTTTGGTTTATGAAGATTATGTTAAACTTGGCAAGGAGACAATTCCAAATGCCGAAAAGGAACTTCAACAACTTAAAGAAGAGATGGATGACAAATCTCAGGCTCTTGACGATGTTTTAGGTGTTTTAGCACAAATAAAGACAGACAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGACCGGCTTTTCCTAGAAATTCAACATTTGCAAAAGGAAGTTGAGGAATTAGAATATAAGCTTGATTTTCGAGGACAGGGAGTGAGGACTCTGGAGGAGATTCAATTTGAGCTTAACACATTGCAGAGAACAAAGGACAATTTGCAATCTGAATTGGAGAGGCTGAGGGATGAAGAAAGGCATATGGAGAATGATCTATCAAATATTCGATTACGGTGGCACAGTCTAAGGGAGGAAAAAGTGAAAGCAACTGCCATATTGGAAAATGTTAAAAGATTAGAAGAAGAATTGGAACGGTTAACTGAAGAAAAGACCCAAGTTGATCTTGATGAGAAGCATTTGGCAGAAGCTCTCAGACCTTTATCCAAGGAGAAAGATAAATTACTTGCTGACCATAATGAACTGAAAATTAGACTCAGTCGCGAGTATGAGAATCTGGCTGAACAAAAGAGAACTTATCAACAAGAAGCTGATGCAATTTTTAAAATGAATTCCAAGATTAAAGAGTATTCTGAGTTAAAGAAAGGAGACAGGTTGAAGGAGCTGCAGGAAAAGAAATCTCTATCAGAATCTCAACTTCAAAGTTGTGATACCAGGAAGCAGGAAATTTCAGCTGAACTAAACAAAAGTAAAGATTTGATACGAAATCAAGATCAATTAAAAAGAAATATTGAGGACAACTTAAATTATAGGAAAACAAAGGCTGAAGTAGATGAGCTAACACATGAAATTGAAACACTAGAAGAAAATATACTGAAGGCTGGTGGGATTTCTCCGGTTGAAACTGAACTCCAGAAACTAAAACAGGAGAGGGAGAGACTTCTTTCAGAGATGAACAGGTGCCATGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAAGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGATCAGCTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGATAAATACTACAATGCACTTGATAAAGCATTGATGCGCTTTCACGCAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTATGGCAGCAAACTTATCGAGGACAAGATATAGACTACATTAGTATTCATTCAGACTCCGAAGGTGCAGGGACTCGTTCTTACAGTTACAAGGTTCTCATGCAAACTGGAGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCATCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTCGCACTGGATGAACCTACCACAAATTTAGATGGACCAAATGCCGAAAGTCTGGCTGCAGCTCTCGTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGTGTCGCCAAAGATGACCTTCAGCATAGTATAATCGAAAGTCAGGAGATATTTGACTGA 3954 0.394 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRRYTKALEVIKKLHKEQGHEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESVKCQVQQLDGNIKKLDDKIRHAEKTIQDLRKLQEQISTKTAQRSTLFKEQQKQYAALPEENEDTDEELMEWKTKFEERIAILEAKVKRLEREWTDTDDKSSILQKTIPHFIHEISKLQNEADAHLSLKNERDSSIQSLFARYNLGSLPKSPFSDEVVLNLTNRVKLRLADLEKDLGDKKKANDNELNMAWDCYMNANDRWKDTEAEKKAKTEIKSGILKRIEEKKNELDKSELEIPNLNFSHIDERERNLGKEVERKANQLDERQFEPNIRQLQNEIYSVDQKIKAVNREKEVMSSDSENRVKISYKKAELENQKKKHKKIIDDQKDKIRKVLKGRVPLDKDVKKEVTQALRAVGAEFDDLNAKYREAEKEVNMLQMKIQEVNNNLSKHHKDLESRKRFIESKLQSLDQQCSGIDSYLKVLESAKEKREVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERSFSSEEEDDFVKKQRVKAASSAEHMKVLAVESSNAESHYQQLDKLRLVYEDYVKLGKETIPNAEKELQQLKEEMDDKSQALDDVLGVLAQIKTDKDLVETLVQPVENADRLFLEIQHLQKEVEELEYKLDFRGQGVRTLEEIQFELNTLQRTKDNLQSELERLRDEERHMENDLSNIRLRWHSLREEKVKATAILENVKRLEEELERLTEEKTQVDLDEKHLAEALRPLSKEKDKLLADHNELKIRLSREYENLAEQKRTYQQEADAIFKMNSKIKEYSELKKGDRLKELQEKKSLSESQLQSCDTRKQEISAELNKSKDLIRNQDQLKRNIEDNLNYRKTKAEVDELTHEIETLEENILKAGGISPVETELQKLKQERERLLSEMNRCHGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDKYYNALDKALMRFHAMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDLQHSIIESQEIFD 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00040 1317 ProSiteProfiles Rad50 zinc-hook domain profile. 649 748 IPR013134 -
Cca01g00040 1317 Coils Coil 809 829 - -
Cca01g00040 1317 Coils Coil 1066 1093 - -
Cca01g00040 1317 Coils Coil 310 337 - -
Cca01g00040 1317 CDD ABC_Rad50 1206 1309 IPR045171 -
Cca01g00040 1317 Pfam Rad50 zinc hook motif 689 725 IPR013134 -
Cca01g00040 1317 Pfam AAA domain 7 257 IPR038729 GO:0140664
Cca01g00040 1317 Coils Coil 840 881 - -
Cca01g00040 1317 Coils Coil 508 528 - -
Cca01g00040 1317 Coils Coil 1039 1059 - -
Cca01g00040 1317 Gene3D - 1008 1315 IPR027417 -
Cca01g00040 1317 Coils Coil 885 919 - -
Cca01g00040 1317 TIGRFAM rad50: rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Cca01g00040 1317 Coils Coil 754 788 - -
Cca01g00040 1317 Coils Coil 938 965 - -
Cca01g00040 1317 Coils Coil 988 1008 - -
Cca01g00040 1317 CDD ABC_Rad50 4 170 IPR045171 -
Cca01g00040 1317 Coils Coil 546 566 - -
Cca01g00040 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1287 IPR027417 -
Cca01g00040 1317 Coils Coil 589 648 - -
Cca01g00040 1317 Coils Coil 243 280 - -
Cca01g00040 1317 Gene3D - 4 256 IPR027417 -
Cca01g00040 1317 Coils Coil 452 472 - -
Cca01g00040 1317 PANTHER RAD50 1 1315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00040 Cca-Chr1 441506 451291 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00040 K10866 - gmx:100818545 2183.68