Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00039 ATGTTTTCGAGTCCGAAGTGGGGAGGGGAGGGGTTTGAGATGAAGAACGTGGAGGGTGGTTTCACGCGACTTGCCTCGTTCGTCTGCGATTGTGAGCCATTCTCGGAGGAAGACCTCAAAGCCATCGACGCCTCTCTTTCCAACGCCACCAATAAACGTCCTCGTTCCAACGATCACCCTCCCCGCCGCCGCTTGCCCACATCGCTTGTCGCTCTCCAACACCCTAATGCTTCTTCTCTCTCGCCTCATCCAGGCTATTCAAGAATGAGATTACCTGTGTTGAAGTTTAGTGGTCAAATTATGTATAGCAGGACTTTTGACGCTGTAGAGAAAGCTGCAGCGAAGCTCTTACAAATTCTGGAAGAAAGAAAAAGAGAGATGATGCAAATTGTGATTGGATTTGACATTGAGTGGAAACCCACCTTTAAAAAAGGTGTTCCACCAGGAAAGGTGGCAGTGATGCAGATATGTGGTGACACTAGTCATTGTCATGTTCTACATCTAATTCATTCCGGAATCCCTCAGAATTTACAGCTTTTGCTTGAAGATCCCACAGTCTTGAAGGTTGGAGCTGGGATTGATGGGGATGCTGTGAAGGTTTTTAAGGATTATAACATATCTGTTAAAGGTGTGATGGATCTTTCTTTCCATGCTAATCAAAAGCTTGGTGGAGATCAAAAGTGGGGTCTTGCATCCTTGGCTGAAAAACTTTTATCAAAACAGCTTAAAAAACCCAAAAAAATAAGACTGGGAAATTGGGAGACTCCTATTTTGTCACAGGGGCAACTAGAGTATGCTGCAACAGATGCTTTTGCTTCTTGGTATCTTTATCAGGCGATTAAAGATCTCCCGGACCCAGACGCCCAGGAAGTTACTAACAGAAGTGGGGAAGTTGATGGTGTACCGCAAGAATGA 915 0.4525 MFSSPKWGGEGFEMKNVEGGFTRLASFVCDCEPFSEEDLKAIDASLSNATNKRPRSNDHPPRRRLPTSLVALQHPNASSLSPHPGYSRMRLPVLKFSGQIMYSRTFDAVEKAAAKLLQILEERKREMMQIVIGFDIEWKPTFKKGVPPGKVAVMQICGDTSHCHVLHLIHSGIPQNLQLLLEDPTVLKVGAGIDGDAVKVFKDYNISVKGVMDLSFHANQKLGGDQKWGLASLAEKLLSKQLKKPKKIRLGNWETPILSQGQLEYAATDAFASWYLYQAIKDLPDPDAQEVTNRSGEVDGVPQE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00039 304 SUPERFAMILY Ribonuclease H-like 131 281 IPR012337 -
Cca01g00039 304 SMART 35exoneu6 107 285 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca01g00039 304 MobiDBLite consensus disorder prediction 46 84 - -
Cca01g00039 304 CDD WRN_exo 108 281 - -
Cca01g00039 304 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED 71 286 - -
Cca01g00039 304 Pfam 3'-5' exonuclease 120 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cca01g00039 304 Gene3D - 85 286 IPR036397 GO:0003676
Cca01g00039 304 PANTHER 3-5 EXONUCLEASE 71 286 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00039 K22807 - gmx:100801291 465.692