Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00038 ATGGGTTCTCCAGCGGACACGAGTAAGAGCATAAAGGTAGAGAGATACAAGAGGTACATTAGGAGAGTGAACAGCACGAAGCTGTTAAACGCGTCCTCGAAGCTCCTCTTCCGCGCCACTCTGTTAGTGGCGCTCATCCTCCAGCTGAGGCACTCCGCCACGCCGCGGCGGCCCAACGGCCTCACCGTCCTGGTGACAGGGGCAGCGGGGTTCGTGGGGTCCCACTGCTCCCTGGCCCTGAAGAAGCGAGGCGACGGCGTGCTGGGCCTGGACAACTTCAACGCCTACTACGACCCCTCCCTGAAGCGCGCAAGACAAGCAATGCTGGCAAAGCACCAAGTGTTGATCGTGGAGGGGGACCTAAACGACACGCCCTTGCTCCACAAACTCTTGGACGTGGTGGCCTTCACGCACATCCTCCACCTGGCCGCCCAAGCTGGGGTCCGTTACGCCATGCACAACCCCCAATCCTACGTCACCGCCAACATCGCCGGCTTCGTTAACCTCCTGGAGGCTGCCAAATCCGCCAACCCCCAGCCCGCCATCGTCTGGGCCTCCTCCAGCTCTGTGTATGGGCTCAACACCGAAAACCCATTCTCGGAGCTCCACCGCACCGACCAGCCCGCTAGCCTCTACGCTGCGACTAAAAAGGCCGGCGAGGAGATAGCCCACAGTTACAACCACATCTACGGCCTCTCCCTTACTGGGCTTCGCTTCTTTACTGTGTACGGCCCATGGGGGAGGCCCGACATGGCCTACTTCTTCTTCACCAAAGACATCCTCCAGGGGAAGAGCATCGACGTCTACGAAACCCCCGAGGGGAAGCAGGTGGCGCGTGACTTCACCTACATCGACGACATCGTTAAGGGGTGCCTCGGGGCGCTGGACACCGCCGAGAAGAGCAGCGGCAGCGGCGGCAAGAAGCGCGGGGCGGCGCAGTTGAGAGTGTACAACCTGGGCAACACTTCTCCCGTGCCCGTGGGGAAGCTTGTTTCCATTTTGGAGGGGTTGCTGAACAGCAAGGCGAAGAAGCACGTGATCAAGATGCCTTCGAACGGTGACGTTCCCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGTGACGGTCCCTACACCCACGCTAACGTCAGCTTGGCTTTCAGGGACTTGGCCTATAAACCCACCACGGATCTCCCCACGGGTCTCAGGAAGTTCGTCAAGTGGTACGTTGGGTATTACGGCCTCCAAACCAGCCTCAAAAAGGATATTCCTTCCGCTTAA 1485 0.4963 MGSPADTSKSIKVERYKRYIRRVNSTKLLNASSKLLFRATLLVALILQLRHSATPRRPNGLTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNAYYDPSLKRARQAMLAKHQVLIVEGDLNDTPLLHKLLDVVAFTHILHLAAQAGVRYAMHNPQSYVTANIAGFVNLLEAAKSANPQPAIVWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHSYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKSIDVYETPEGKQVARDFTYIDDIVKGCLGALDTAEKSSGSGGKKRGAAQLRVYNLGNTSPVPVGKLVSILEGLLNSKAKKHVIKMPSNGDVPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGPYTHANVSLAFRDLAYKPTTDLPTGLRKFVKWYVGYYGLQTSLKKDIPSA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00038 494 Gene3D - 61 482 - -
Cca01g00038 494 PANTHER EPIMERASE-RELATED 1 47 - -
Cca01g00038 494 PANTHER EPIMERASE-RELATED 441 490 - -
Cca01g00038 494 PANTHER EPIMERASE-RELATED 48 358 - -
Cca01g00038 494 PRINTS Nucleotide sugar epimerase signature 279 294 - -
Cca01g00038 494 PRINTS Nucleotide sugar epimerase signature 89 105 - -
Cca01g00038 494 PRINTS Nucleotide sugar epimerase signature 314 329 - -
Cca01g00038 494 PANTHER UDP-GLUCURONATE 4-EPIMERASE 6 1 47 - -
Cca01g00038 494 PANTHER UDP-GLUCURONATE 4-EPIMERASE 6 441 490 - -
Cca01g00038 494 PANTHER UDP-GLUCURONATE 4-EPIMERASE 6 48 358 - -
Cca01g00038 494 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 483 IPR036291 -
Cca01g00038 494 Pfam NAD dependent epimerase/dehydratase family 63 300 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00038 Cca-Chr1 422503 424340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00038 442 494 Miscellaneous Gene Families AT3G23820 71.698 1.13e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00038 K08679 - gmx:100786653 635.565