Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00028 ATGGACCTGGTGGAGTTGGAGGCGGTGGAAGGGCTCCGATGGACGTGGAATTCATGGCCGGCGGAGGGGAAGAAAAGCAGTAACAGTCTGGTGATCCCTCTCAGCATAATGTGCACACCCTTGGCCTTGATGCAGAGCAGCGATGTCCCTCTTCTGCCATACGATCCACTTGGGTGCTCCAGATGCGGCGCCGTTTTGAACCCCTACGCCCGACTCGACTACCAGTCACGCATCTGGCACTGCCCCTTCTGCTCCCGCCGCAATCCCTTCCCCCGCCCCATCGCCGACACCAACCTCCCCGCCGAGCTCTTTCCCACCTACAGCACCGTCGACACCGTCGAGTActctctcctccctccctctccccctccccccgccttcctcttcctcctcgacctctccacccccgaccaccagctcctccccctcaagaaccacctcctccacctcctccaccacctccccgaccacgccctcgtctccctcctcaccttcgactccttcgtctacctccaccgcctccgctactcccacttctcctcccttctcctcttccacggccaccgccacctctcctccaccCAGATCCGCCACTTCCTCGGACAATCCCCCAAACACTCCTTCCTCCTCCCTATCTCCGAATGCCAATTCACCATCACCTCCGCTATCGAAGAGATCCGCTCCACTTCCACCTCCGCCTCCCCCTCCCAAACTCGCCCCCCGCGCTGCACCGGCGCTGCAATCTCCGTCGCCCTCGGCCTCCTCGAATCTTGCCAAATCTCCACCGGCTCCAGAATCATGCTCTTCACCTCCGGCCCCGCCACTCTCGGTCCCGGAATCGTCGTCGATTCTGATCTCCGCCAACCTATCCGAACCCACCACCACATCTTCAACGCCCAAGCTACGCACCACGCCAAGTCCTGCGCCTTCTATAACCAAGTCTCCAAGAGGCTCTCCGACGCTTCTGTTGTCCTCGATCTCTTCGCCTCTTCCCTCGACCAACTCGGGGCCGCCGAGCTACGCCAACCCGTGGAACGCTCCGGCGGATTCATGATCCTCTCCGACTCCTTCGATTCCGAGCAGTTCAAGAAATGTCTCAGGCATATATTCAAGTGCGACGACCACGGCCATTTGGAGATGAATTTCGATGCCACTATTGAAATTGTCACCACCCGAGATGTCAAAATCTCCGGAGCGCTTGGTCCCTGCGTGTCTCTTCAGAGAAAGAATGGTTTGGTGAGTGAGACTGAGGTTGGAGAAGGTGGCACCTCTGTGTGGAAGTTAAACACAGTCACCAACAAAACCTGCATTGCCTTCTTCTTCCAAGTGAATTATGAGCACAAAATTCAACCTGGCTCTGCGTTTTTGATTCAGTTTATAACGCGATACAGGCAGGGGAACTTGGGATACCGGAAAAGAGTTACCACTGCTGCAAGGCGATGGGTTGCGAACCATTCCGCCGATATTGCCGCCGGCTTTGATCAAGAAGCCGCCGCTGCGGTTATGGCCAGACTCGCCATTCTCCGGGCAGAGACTTGCCATGCCCGTGATGTCATTCGATGGCTGGATGACACACTTATTAGTTTTGCTTCCAAGTTTGGGGACTATGTGCCGGAAGATGCATCTTCTTTCCGCCTATCATCAAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTGAGGAGATCTCAATTCATTGATGTTTGCAACACTACTCCCGATGAAACTGCATTTTTCAGGCTGTATTCGTTTGATGGCCCACCTGTTCCTGTACTACTAGATATTCGTTCTGTTTCTCCCGATTTTATCTTGCTCTTTGATTCTTTCTTCTATGTGGTGATTCATTATGGCTCCAAGATTGCACAGTGGAGGAAGCTGGGTTATGACAAGGATCCCAATCATGAGAACTTCAGAAAGTTGTTGGAGGCCCCAGAACTGGATGCCGAGCAATTGGTGGCTGACCGGATTCCGGTGCCCAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCATCTACCAGTTGCAGGTGCTGGCGGTGCAAAGCTGATAAAGAAGGACATTCATTTGAATTATTCTCTATATCGGCTCACGTCAAAGAATATTTGAATTTTGGCTTCATCTATCGCTGA 2157 0.4687 MDLVELEAVEGLRWTWNSWPAEGKKSSNSLVIPLSIMCTPLALMQSSDVPLLPYDPLGCSRCGAVLNPYARLDYQSRIWHCPFCSRRNPFPRPIADTNLPAELFPTYSTVDTVEYSLLPPSPPPPAFLFLLDLSTPDHQLLPLKNHLLHLLHHLPDHALVSLLTFDSFVYLHRLRYSHFSSLLLFHGHRHLSSTQIRHFLGQSPKHSFLLPISECQFTITSAIEEIRSTSTSASPSQTRPPRCTGAAISVALGLLESCQISTGSRIMLFTSGPATLGPGIVVDSDLRQPIRTHHHIFNAQATHHAKSCAFYNQVSKRLSDASVVLDLFASSLDQLGAAELRQPVERSGGFMILSDSFDSEQFKKCLRHIFKCDDHGHLEMNFDATIEIVTTRDVKISGALGPCVSLQRKNGLVSETEVGEGGTSVWKLNTVTNKTCIAFFFQVNYEHKIQPGSAFLIQFITRYRQGNLGYRKRVTTAARRWVANHSADIAAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLISFASKFGDYVPEDASSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLYSFDGPPVPVLLDIRSVSPDFILLFDSFFYVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRIPVPRIIRCDQHSSQARFLLAKLNPSTSCRCWRCKADKEGHSFELFSISAHVKEYLNFGFIYR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00028 718 Pfam Gelsolin repeat 588 674 IPR007123 -
Cca01g00028 718 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 682 IPR037364 -
Cca01g00028 718 SUPERFAMILY vWA-like 124 370 IPR036465 -
Cca01g00028 718 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 580 684 IPR036180 -
Cca01g00028 718 SUPERFAMILY Zn-finger domain of Sec23/24 47 115 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cca01g00028 718 Pfam Sec23/Sec24 helical domain 494 580 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cca01g00028 718 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 682 - -
Cca01g00028 718 Gene3D - 53 112 - -
Cca01g00028 718 Gene3D Sec23/Sec24 helical domain 491 580 - -
Cca01g00028 718 Pfam Sec23/Sec24 beta-sandwich domain 382 482 IPR012990 -
Cca01g00028 718 Pfam Sec23/Sec24 zinc finger 56 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cca01g00028 718 Pfam Sec23/Sec24 trunk domain 122 367 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cca01g00028 718 SUPERFAMILY beta-sandwich domain of Sec23/24 3 493 - -
Cca01g00028 718 Gene3D von Willebrand factor, type A domain 124 380 IPR036465 -
Cca01g00028 718 Gene3D - 6 479 - -
Cca01g00028 718 SUPERFAMILY Helical domain of Sec23/24 494 582 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cca01g00028 718 Gene3D Severin 581 695 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00028 Cca-Chr1 311032 315130 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00028 K14006 - gmx:100784000 1098.19